Protein : Qrob_P0115570.2 Q. robur
Protein Identifier  ? Qrob_P0115570.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR10217:SF479 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED (PTHR10217:SF479) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 734  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100803334 1 732 + 732 Gaps:13 99.86 726 78.76 0.0 probable cyclic nucleotide-gated ion channel 14-like
blastp_kegg lcl|mdm:103456077 1 733 + 733 Gaps:14 98.66 747 77.88 0.0 probable cyclic nucleotide-gated ion channel 14
blastp_kegg lcl|vvi:100267557 7 732 + 726 Gaps:9 99.31 726 79.61 0.0 probable cyclic nucleotide-gated ion channel 14-like
blastp_kegg lcl|pmum:103320111 1 733 + 733 Gaps:16 100.00 731 77.98 0.0 probable cyclic nucleotide-gated ion channel 14
blastp_kegg lcl|pvu:PHAVU_009G102100g 1 733 + 733 Gaps:20 100.00 719 78.30 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0018s03380g 23 733 + 711 Gaps:8 98.47 720 79.69 0.0 POPTRDRAFT_779207 cyclic nucleotide-regulated ion channel family protein
blastp_kegg lcl|tcc:TCM_036840 23 733 + 711 Gaps:6 98.33 717 79.15 0.0 Cyclic nucleotide-gated channel 14 isoform 1
blastp_kegg lcl|pxb:103957529 1 733 + 733 Gaps:15 98.66 746 76.49 0.0 probable cyclic nucleotide-gated ion channel 14
blastp_kegg lcl|pxb:103953596 1 733 + 733 Gaps:15 98.66 746 76.49 0.0 probable cyclic nucleotide-gated ion channel 14
blastp_kegg lcl|fve:101311357 1 733 + 733 Gaps:27 100.00 716 79.61 0.0 probable cyclic nucleotide-gated ion channel 14-like
blastp_pdb 1wgp_A 487 610 + 124 none 90.51 137 70.97 4e-53 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_pdb 2ptm_A 422 563 + 142 Gaps:6 68.69 198 27.21 9e-11 mol:protein length:198 Hyperpolarization-activated (Ih) channel
blastp_pdb 3ukv_D 414 582 + 169 Gaps:7 76.42 212 25.31 4e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukv_C 414 582 + 169 Gaps:7 76.42 212 25.31 4e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukv_A 414 582 + 169 Gaps:7 76.42 212 25.31 4e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukv_B 414 582 + 169 Gaps:7 76.42 212 25.31 4e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_D 414 582 + 169 Gaps:7 76.42 212 25.31 4e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_C 414 582 + 169 Gaps:7 76.42 212 25.31 4e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_A 414 582 + 169 Gaps:7 76.42 212 25.31 4e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_B 414 582 + 169 Gaps:7 76.42 212 25.31 4e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 1 729 + 729 Gaps:26 99.86 726 71.17 0.0 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L7Z0|CNG17_ARATH 1 732 + 732 Gaps:28 100.00 720 66.39 0.0 Probable cyclic nucleotide-gated ion channel 17 OS Arabidopsis thaliana GN CNGC17 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LEQ3|CNG18_ARATH 79 732 + 654 Gaps:22 94.90 706 61.94 0.0 Putative cyclic nucleotide-gated ion channel 18 OS Arabidopsis thaliana GN CNGC18 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SU64|CNG16_ARATH 80 726 + 647 Gaps:23 94.18 705 60.39 0.0 Probable cyclic nucleotide-gated ion channel 16 OS Arabidopsis thaliana GN CNGC16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 70 672 + 603 Gaps:6 88.05 678 60.97 0.0 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 51 729 + 679 Gaps:14 92.28 738 54.04 0.0 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 71 733 + 663 Gaps:12 88.58 753 54.72 0.0 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 71 729 + 659 Gaps:39 87.31 733 56.56 0.0 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 58 729 + 672 Gaps:40 91.49 717 54.57 0.0 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 82 727 + 646 Gaps:41 88.13 716 55.47 0.0 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 492 623 132 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
ProSiteProfiles 492 575 84 PS50042 none cAMP/cGMP binding motif profile. IPR000595
PANTHER 345 681 337 PTHR10217:SF479 none none none
Gene3D 415 483 69 G3DSA:1.10.287.630 none none none
Phobius 260 281 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 140 409 270 PF00520 none Ion transport protein IPR005821
Phobius 407 733 327 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 131 285 155 G3DSA:1.10.287.70 none none none
Gene3D 354 414 61 G3DSA:1.10.287.70 none none none
Phobius 1 96 96 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 80 290 211 PTHR10217:SF479 none none none
Phobius 240 259 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 86 286 201 SSF81324 none none none
SUPERFAMILY 354 414 61 SSF81324 none none none
PANTHER 80 290 211 PTHR10217 none none none
PANTHER 345 681 337 PTHR10217 none none none
SUPERFAMILY 422 614 193 SSF51206 none none IPR018490
Phobius 189 211 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 515 608 94 PF00027 none Cyclic nucleotide-binding domain IPR000595
Phobius 282 383 102 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 97 119 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 212 222 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 120 130 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 223 239 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 490 608 119 G3DSA:2.60.120.10 none none IPR014710
Phobius 384 406 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 131 150 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 151 188 38 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

6 Localization

Analysis Start End Length
TMHMM 384 406 22
TMHMM 189 211 22
TMHMM 223 245 22
TMHMM 132 154 22
TMHMM 97 119 22
TMHMM 260 282 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting