Protein : Qrob_P0115350.2 Q. robur
Protein Identifier  ? Qrob_P0115350.2 Organism . Name  Quercus robur
Score  4.0 Score Type  egn
Protein Description  (M=3) 2.7.1.46 - L-arabinokinase. Code Enzyme  EC:2.7.1.46
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1145  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0016301 kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
GO:0016773 phosphotransferase activity, alcohol group as acceptor Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266663 1 844 + 844 Gaps:20 99.77 854 65.49 0.0 putative pentatricopeptide repeat-containing protein At5g08310 mitochondrial-like
blastp_kegg lcl|pmum:103343733 1 836 + 836 Gaps:105 99.37 789 73.47 0.0 putative pentatricopeptide repeat-containing protein At5g08310 mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa019788mg 1 836 + 836 Gaps:111 100.00 778 74.04 0.0 hypothetical protein
blastp_kegg lcl|cit:102627087 35 844 + 810 Gaps:4 95.62 845 64.98 0.0 putative pentatricopeptide repeat-containing protein At5g08310 mitochondrial-like
blastp_kegg lcl|cic:CICLE_v10030697mg 35 844 + 810 Gaps:4 95.62 845 64.48 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_007709 1 836 + 836 Gaps:9 98.71 850 62.10 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein putative
blastp_kegg lcl|pop:POPTR_0005s09280g 1 818 + 818 Gaps:19 95.93 835 63.30 0.0 POPTRDRAFT_558673 hypothetical protein
blastp_kegg lcl|mdm:103456312 1 781 + 781 Gaps:46 99.61 778 68.39 0.0 putative pentatricopeptide repeat-containing protein At5g08310 mitochondrial
blastp_kegg lcl|csv:101213674 1 839 + 839 Gaps:14 99.53 849 57.63 0.0 putative pentatricopeptide repeat-containing protein At5g08310 mitochondrial-like
blastp_kegg lcl|cmo:103493457 31 839 + 809 Gaps:12 91.93 880 58.22 0.0 putative pentatricopeptide repeat-containing protein At5g08310 mitochondrial
blastp_uniprot_sprot sp|P0C8Q6|PP368_ARATH 35 834 + 800 Gaps:7 96.27 832 53.31 0.0 Putative pentatricopeptide repeat-containing protein At5g08310 mitochondrial OS Arabidopsis thaliana GN At5g08310 PE 3 SV 1
blastp_uniprot_sprot sp|O23461|ARAK_ARATH 845 1138 + 294 Gaps:116 41.87 1039 53.33 4e-86 L-arabinokinase OS Arabidopsis thaliana GN ARA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M907|PP217_ARATH 27 829 + 803 Gaps:178 97.01 871 45.56 3e-78 Pentatricopeptide repeat-containing protein At3g06920 OS Arabidopsis thaliana GN At3g06920 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FMF6|PP444_ARATH 69 835 + 767 Gaps:110 90.55 730 43.57 2e-75 Pentatricopeptide repeat-containing protein At5g64320 mitochondrial OS Arabidopsis thaliana GN At5g64320 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFF1|PP281_ARATH 72 834 + 763 Gaps:209 90.58 754 55.64 4e-75 Pentatricopeptide repeat-containing protein At3g53700 chloroplastic OS Arabidopsis thaliana GN MEE40 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SXD1|PPR91_ARATH 102 835 + 734 Gaps:191 92.70 630 57.53 3e-74 Pentatricopeptide repeat-containing protein At1g62670 mitochondrial OS Arabidopsis thaliana GN At1g62670 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SS81|PP221_ARATH 77 820 + 744 Gaps:187 98.84 687 53.31 8e-74 Pentatricopeptide repeat-containing protein At3g09060 OS Arabidopsis thaliana GN At3g09060 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAN5|PPR98_ARATH 115 835 + 721 Gaps:118 93.97 614 47.14 8e-71 Pentatricopeptide repeat-containing protein At1g63080 mitochondrial OS Arabidopsis thaliana GN At1g63080 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAN0|PPR99_ARATH 113 835 + 723 Gaps:213 91.27 630 59.30 1e-70 Pentatricopeptide repeat-containing protein At1g63130 mitochondrial OS Arabidopsis thaliana GN At1g63130 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAN6|PPR97_ARATH 40 835 + 796 Gaps:285 91.02 590 64.99 2e-69 Pentatricopeptide repeat-containing protein At1g63070 mitochondrial OS Arabidopsis thaliana GN At1g63070 PE 2 SV 1
rpsblast_cdd gnl|CDD|178757 96 837 + 742 Gaps:190 57.17 1060 41.91 5e-23 PLN03218 PLN03218 maturation of RBCL 1 Provisional.
rpsblast_cdd gnl|CDD|178626 161 771 + 611 Gaps:232 71.41 857 41.18 4e-18 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|161727 867 1129 + 263 Gaps:82 73.83 386 26.67 2e-15 TIGR00131 gal_kin galactokinase. Galactokinase is a member of the GHMP kinases (Galactokinase Homoserine kinase Mevalonate kinase Phosphomevalonate kinase) and shares with them an amino-terminal domain probably related to ATP binding.The galactokinases found by this HMM are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional with regulatory activities that are independent of galactokinase activity.
rpsblast_cdd gnl|CDD|178630 169 736 + 568 Gaps:178 66.71 697 34.19 3e-15 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|205222 294 741 + 448 none 100.00 50 86.00 4e-14 pfam13041 PPR_2 PPR repeat family. This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
rpsblast_cdd gnl|CDD|30502 910 1129 + 220 Gaps:55 56.67 390 28.96 9e-14 COG0153 GalK Galactokinase [Carbohydrate transport and metabolism].
rpsblast_cdd gnl|CDD|180014 964 1118 + 155 Gaps:38 33.85 387 33.59 7e-09 PRK05322 PRK05322 galactokinase Provisional.
rpsblast_cdd gnl|CDD|205109 618 720 + 103 none 100.00 34 88.24 5e-08 pfam12854 PPR_1 PPR repeat. This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
rpsblast_kog gnl|CDD|35850 845 903 + 59 Gaps:15 15.13 489 27.03 4e-07 KOG0631 KOG0631 KOG0631 Galactokinase [Carbohydrate transport and metabolism].

67 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 909 943 35 G3DSA:3.30.230.10 none none IPR014721
PANTHER 27 44 18 PTHR24015:SF416 none none none
PANTHER 1 11 11 PTHR24015:SF416 none none none
ProSiteProfiles 693 727 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 1026 1111 86 PF08544 none GHMP kinases C terminal IPR013750
PRINTS 1077 1094 18 PR00959 "KEGG:00052+2.7.1.6","KEGG:00520+2.7.1.6","MetaCyc:PWY-3821","MetaCyc:PWY-6317","MetaCyc:PWY-6527","UniPathway:UPA00214" Mevalonate kinase family signature IPR006206
PRINTS 910 929 20 PR00959 "KEGG:00052+2.7.1.6","KEGG:00520+2.7.1.6","MetaCyc:PWY-3821","MetaCyc:PWY-6317","MetaCyc:PWY-6527","UniPathway:UPA00214" Mevalonate kinase family signature IPR006206
ProSiteProfiles 448 482 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Phobius 785 1144 360 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 692 741 50 PF13041 none PPR repeat family IPR002885
Pfam 301 342 42 PF13041 none PPR repeat family IPR002885
Pfam 447 496 50 PF13041 none PPR repeat family IPR002885
Pfam 622 671 50 PF13041 none PPR repeat family IPR002885
Phobius 1 764 764 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 328 381 54 G3DSA:1.25.40.10 none none IPR011990
Gene3D 659 757 99 G3DSA:1.25.40.10 none none IPR011990
Gene3D 235 290 56 G3DSA:1.25.40.10 none none IPR011990
Gene3D 451 484 34 G3DSA:1.25.40.10 none none IPR011990
ProSiteProfiles 154 188 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 397 431 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 728 762 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 260 293 34 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Phobius 765 784 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 623 657 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 483 517 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 329 363 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 763 797 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 192 221 30 PF13812 none Pentatricopeptide repeat domain IPR002885
Pfam 400 425 26 PF13812 none Pentatricopeptide repeat domain IPR002885
ProSiteProfiles 225 259 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 38   Mitochondrion 4 0.059 0.571 NON-PLANT 38