Protein : Qrob_P0114710.2 Q. robur
Protein Identifier  ? Qrob_P0114710.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 3.5.4.25 - GTP cyclohydrolase II. Code Enzyme  EC:3.5.4.25
Gene Prediction Quality  validated Protein length 

Sequence

Length: 563  
Kegg Orthology  K14652
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0009231 riboflavin biosynthetic process The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Catalysis of the reaction: D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H(+).
GO:0003935 GTP cyclohydrolase II activity Catalysis of the reaction: GTP + 3 H(2)O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + diphosphate + formate + 3 H(+).

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100248717 1 562 + 562 Gaps:5 100.00 559 84.26 0.0 riboflavin biosynthesis protein ribBA chloroplastic-like
blastp_kegg lcl|tcc:TCM_007420 1 562 + 562 Gaps:5 100.00 561 82.00 0.0 GTP cyclohydrolase II isoform 1
blastp_kegg lcl|pmum:103336032 1 562 + 562 Gaps:2 100.00 562 81.32 0.0 bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic
blastp_kegg lcl|cit:102621261 2 562 + 561 Gaps:1 99.65 564 80.25 0.0 bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa020339mg 53 562 + 510 Gaps:1 99.03 514 83.30 0.0 hypothetical protein
blastp_kegg lcl|gmx:100801046 1 547 + 547 Gaps:18 97.24 544 81.10 0.0 bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic-like
blastp_kegg lcl|gmx:100782332 1 560 + 560 Gaps:18 99.63 544 78.60 0.0 riboflavin biosynthesis protein ribBA chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_006G204200g 1 543 + 543 Gaps:18 98.13 535 79.05 0.0 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10003958mg 25 540 + 516 Gaps:13 93.35 541 81.39 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s04980g 36 561 + 526 Gaps:4 99.81 529 77.46 0.0 POPTRDRAFT_217377 hypothetical protein
blastp_pdb 1g58_B 135 338 + 204 Gaps:2 93.09 217 48.51 3e-64 mol:protein length:217 3 4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE
blastp_pdb 1g58_A 135 338 + 204 Gaps:2 93.09 217 48.51 3e-64 mol:protein length:217 3 4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE
blastp_pdb 1g57_B 135 338 + 204 Gaps:2 93.09 217 48.51 3e-64 mol:protein length:217 3 4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE
blastp_pdb 1g57_A 135 338 + 204 Gaps:2 93.09 217 48.51 3e-64 mol:protein length:217 3 4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE
blastp_pdb 1iez_A 135 338 + 204 Gaps:2 93.09 217 48.51 3e-64 mol:protein length:217 3 4-Dihydroxy-2-Butanone 4-Phosphate Synthase
blastp_pdb 3ls6_B 135 338 + 204 Gaps:2 93.09 217 49.01 4e-64 mol:protein length:217 3 4-Dihydroxy-2-butanone 4-phosphate synthase
blastp_pdb 3ls6_A 135 338 + 204 Gaps:2 93.09 217 49.01 4e-64 mol:protein length:217 3 4-Dihydroxy-2-butanone 4-phosphate synthase
blastp_pdb 3lrj_D 135 338 + 204 Gaps:2 93.09 217 49.01 4e-64 mol:protein length:217 3 4-Dihydroxy-2-butanone 4-phosphate synthase
blastp_pdb 3lrj_C 135 338 + 204 Gaps:2 93.09 217 49.01 4e-64 mol:protein length:217 3 4-Dihydroxy-2-butanone 4-phosphate synthase
blastp_pdb 3lrj_B 135 338 + 204 Gaps:2 93.09 217 49.01 4e-64 mol:protein length:217 3 4-Dihydroxy-2-butanone 4-phosphate synthase
blastp_uniprot_sprot sp|P47924|RIBA1_ARATH 25 538 + 514 Gaps:12 92.82 543 79.76 0.0 Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic OS Arabidopsis thaliana GN RIBA1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6Z234|RIBA1_ORYSJ 84 561 + 478 Gaps:2 88.85 538 76.99 0.0 Probable bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic OS Oryza sativa subsp. japonica GN RIBA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0E079|RIBA2_ORYSJ 122 548 + 427 Gaps:1 77.03 553 82.16 0.0 Probable bifunctional riboflavin biosynthesis protein RIBA 2 chloroplastic OS Oryza sativa subsp. japonica GN RIBA2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NLQ7|RIBA2_ARATH 1 511 + 511 Gaps:39 99.58 476 69.41 0.0 Monofunctional riboflavin biosynthesis protein RIBA 2 chloroplastic OS Arabidopsis thaliana GN RIBA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6L506|RIBA3_ORYSJ 104 540 + 437 Gaps:1 81.72 536 68.04 0.0 Probable monofunctional riboflavin biosynthesis protein RIBA 3 chloroplastic OS Oryza sativa subsp. japonica GN RIBA3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FN89|RIBA3_ARATH 101 532 + 432 Gaps:1 85.07 509 65.59 0.0 Monofunctional riboflavin biosynthesis protein RIBA 3 chloroplastic OS Arabidopsis thaliana GN RIBA3 PE 1 SV 1
blastp_uniprot_sprot sp|Q0AXM5|RIBBA_SYNWW 135 531 + 397 Gaps:4 98.74 398 61.58 4e-167 Riboflavin biosynthesis protein RibBA OS Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) GN ribBA PE 3 SV 1
blastp_uniprot_sprot sp|A4X639|RIBBA_SALTO 135 533 + 399 Gaps:2 99.25 400 58.19 8e-164 Riboflavin biosynthesis protein RibBA OS Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN ribBA PE 3 SV 1
blastp_uniprot_sprot sp|Q5WH08|RIBBA_BACSK 135 534 + 400 Gaps:4 99.75 397 58.33 1e-162 Riboflavin biosynthesis protein RibBA OS Bacillus clausii (strain KSM-K16) GN ribBA PE 3 SV 1
blastp_uniprot_sprot sp|O66679|RIBBA_AQUAE 135 532 + 398 Gaps:4 98.03 406 58.04 2e-162 Riboflavin biosynthesis protein RibBA OS Aquifex aeolicus (strain VF5) GN ribBA PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 129 344 216 G3DSA:3.90.870.10 none none IPR017945
TIGRFAM 136 333 198 TIGR00506 "KEGG:00740+4.1.99.12","MetaCyc:PWY-6167","MetaCyc:PWY-6168","UniPathway:UPA00275" ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase IPR000422
SUPERFAMILY 338 510 173 SSF142695 none none none
PANTHER 118 557 440 PTHR21327 none none none
PANTHER 118 557 440 PTHR21327:SF6 none none none
Hamap 134 530 397 MF_01283 "KEGG:00740+4.1.99.12+3.5.4.25","MetaCyc:PWY-6167","MetaCyc:PWY-6168","MetaCyc:PWY-7539","UniPathway:UPA00275","UniPathway:UPA00275" Riboflavin biosynthesis protein RibBA [ribBA]. IPR016299
SUPERFAMILY 134 336 203 SSF55821 none none IPR017945
Pfam 340 509 170 PF00925 "KEGG:00740+3.5.4.25","MetaCyc:PWY-6168","MetaCyc:PWY-7539","UniPathway:UPA00275" GTP cyclohydrolase II IPR000926
Pfam 138 333 196 PF00926 "KEGG:00740+4.1.99.12","MetaCyc:PWY-6167","MetaCyc:PWY-6168","UniPathway:UPA00275" 3,4-dihydroxy-2-butanone 4-phosphate synthase IPR000422
Hamap 338 534 197 MF_00179 "KEGG:00740+3.5.4.25","MetaCyc:PWY-6168","MetaCyc:PWY-7539","UniPathway:UPA00275" GTP cyclohydrolase-2 [ribA]. IPR000926
Hamap 133 337 205 MF_00180 "KEGG:00740+4.1.99.12","MetaCyc:PWY-6167","MetaCyc:PWY-6168","UniPathway:UPA00275" 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. IPR000422
TIGRFAM 342 531 190 TIGR00505 "KEGG:00740+3.5.4.25","MetaCyc:PWY-6168","MetaCyc:PWY-7539","UniPathway:UPA00275" ribA: GTP cyclohydrolase II IPR000926

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting