Protein : Qrob_P0113910.2 Q. robur
Protein Identifier  ? Qrob_P0113910.2 Organism . Name  Quercus robur
Score  97.3 Score Type  egn
Protein Description  (M=1) K10730 - ATP-dependent DNA helicase Q4 [EC:3.6.4.12] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 887  
Kegg Orthology  K10730
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s06660g 1 886 + 886 Gaps:87 100.00 921 66.12 0.0 POPTRDRAFT_886009 ATP-dependent DNA helicase family protein
blastp_kegg lcl|vvi:100256355 33 886 + 854 Gaps:66 93.73 941 65.19 0.0 ATP-dependent DNA helicase Q-like 5-like
blastp_kegg lcl|pper:PRUPE_ppa024068mg 1 886 + 886 Gaps:122 100.00 968 61.98 0.0 hypothetical protein
blastp_kegg lcl|pxb:103949946 1 886 + 886 Gaps:87 100.00 943 62.04 0.0 ATP-dependent DNA helicase Q-like 5
blastp_kegg lcl|pmum:103322011 1 886 + 886 Gaps:137 100.00 981 60.75 0.0 ATP-dependent DNA helicase Q-like 5
blastp_kegg lcl|tcc:TCM_010767 21 885 + 865 Gaps:82 84.42 1046 64.33 0.0 DEAD/DEAH box RNA helicase family protein isoform 1
blastp_kegg lcl|cic:CICLE_v10030662mg 1 886 + 886 Gaps:80 100.00 894 64.99 0.0 hypothetical protein
blastp_kegg lcl|sot:102585773 1 886 + 886 Gaps:118 100.00 974 58.01 0.0 ATP-dependent DNA helicase Q-like 5-like
blastp_kegg lcl|cam:101502373 102 886 + 785 Gaps:64 89.24 911 63.84 0.0 ATP-dependent DNA helicase Q-like 5-like
blastp_kegg lcl|csv:101223322 9 885 + 877 Gaps:89 98.74 952 58.83 0.0 ATP-dependent DNA helicase Q-like 5-like
blastp_pdb 1oyy_A 281 609 + 329 Gaps:32 67.88 523 36.34 4e-61 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 1oyw_A 281 609 + 329 Gaps:32 67.88 523 36.34 4e-61 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 2wwy_B 282 617 + 336 Gaps:40 62.27 591 33.15 7e-51 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2wwy_A 282 617 + 336 Gaps:40 62.27 591 33.15 7e-51 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_B 282 617 + 336 Gaps:40 62.27 591 33.15 7e-51 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_A 282 617 + 336 Gaps:40 62.27 591 33.15 7e-51 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2j0s_A 277 609 + 333 Gaps:49 87.80 410 24.44 3e-12 mol:protein length:410 ATP-DEPENDENT RNA HELICASE DDX48
blastp_pdb 2j0q_B 277 609 + 333 Gaps:49 87.80 410 24.44 3e-12 mol:protein length:410 ATP-DEPENDENT RNA HELICASE DDX48
blastp_pdb 2j0q_A 277 609 + 333 Gaps:49 87.80 410 24.44 3e-12 mol:protein length:410 ATP-DEPENDENT RNA HELICASE DDX48
blastp_pdb 2hxy_D 277 609 + 333 Gaps:49 92.07 391 24.44 3e-12 mol:protein length:391 Probable ATP-dependent RNA helicase DDX48
blastp_uniprot_sprot sp|Q0WVW7|RQL5_ARATH 1 885 + 885 Gaps:124 99.56 911 58.21 0.0 ATP-dependent DNA helicase Q-like 5 OS Arabidopsis thaliana GN RECQL5 PE 2 SV 2
blastp_uniprot_sprot sp|Q75NR7|RECQ4_MOUSE 288 878 + 591 Gaps:158 59.13 1216 32.13 2e-82 ATP-dependent DNA helicase Q4 OS Mus musculus GN Recql4 PE 2 SV 2
blastp_uniprot_sprot sp|O94761|RECQ4_HUMAN 288 879 + 592 Gaps:171 60.35 1208 29.63 4e-81 ATP-dependent DNA helicase Q4 OS Homo sapiens GN RECQL4 PE 1 SV 1
blastp_uniprot_sprot sp|O34748|RECQ_BACSU 282 586 + 305 Gaps:26 55.33 591 37.92 1e-64 Probable ATP-dependent DNA helicase RecQ OS Bacillus subtilis (strain 168) GN recQ PE 3 SV 1
blastp_uniprot_sprot sp|Q9CL21|RECQ_PASMU 277 598 + 322 Gaps:26 54.11 632 37.13 6e-64 ATP-dependent DNA helicase RecQ OS Pasteurella multocida (strain Pm70) GN recQ PE 3 SV 1
blastp_uniprot_sprot sp|P71359|RECQ_HAEIN 280 598 + 319 Gaps:26 54.77 619 37.76 2e-62 ATP-dependent DNA helicase RecQ OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN recQ PE 3 SV 1
blastp_uniprot_sprot sp|Q9VGI8|BLM_DROME 279 611 + 333 Gaps:36 24.41 1487 36.36 4e-60 Bloom syndrome protein homolog OS Drosophila melanogaster GN Blm PE 1 SV 1
blastp_uniprot_sprot sp|P15043|RECQ_ECOLI 281 609 + 329 Gaps:32 58.29 609 36.34 5e-60 ATP-dependent DNA helicase RecQ OS Escherichia coli (strain K12) GN recQ PE 1 SV 5
blastp_uniprot_sprot sp|Q9DEY9|BLM_XENLA 279 601 + 323 Gaps:35 25.95 1364 35.88 1e-58 Bloom syndrome protein homolog OS Xenopus laevis GN blm PE 2 SV 1
blastp_uniprot_sprot sp|P40724|RECQ_SALTY 281 609 + 329 Gaps:32 58.29 609 35.49 2e-57 ATP-dependent DNA helicase RecQ OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN recQ PE 3 SV 3

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 496 577 82 SM00490 none helicase superfamily c-terminal domain IPR001650
Gene3D 275 472 198 G3DSA:3.40.50.300 none none IPR027417
Pfam 294 456 163 PF00270 none DEAD/DEAH box helicase IPR011545
Gene3D 490 613 124 G3DSA:3.40.50.300 none none IPR027417
SMART 288 477 190 SM00487 none DEAD-like helicases superfamily IPR014001
Phobius 1 322 322 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 473 620 148 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Phobius 440 466 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 323 345 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 300 470 171 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Phobius 467 886 420 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 501 577 77 PF00271 none Helicase conserved C-terminal domain IPR001650
SUPERFAMILY 332 596 265 SSF52540 none none IPR027417
Phobius 346 439 94 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 271 886 616 PTHR13710:SF1 none none none
PANTHER 271 886 616 PTHR13710 none none none
ProSitePatterns 407 416 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting