Protein : Qrob_P0112560.2 Q. robur
Protein Identifier  ? Qrob_P0112560.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K07541 - phosphatidylinositol glycan, class X Gene Prediction Quality  validated
Protein length 

Sequence

Length: 253  
Kegg Orthology  K07541
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005789 endoplasmic reticulum membrane The lipid bilayer surrounding the endoplasmic reticulum.
GO:0006506 GPI anchor biosynthetic process The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa008727mg 1 252 + 252 Gaps:7 80.69 321 62.55 7e-113 hypothetical protein
blastp_kegg lcl|pmum:103336858 1 252 + 252 Gaps:7 80.69 321 62.55 2e-112 phosphatidylinositol-glycan biosynthesis class X protein
blastp_kegg lcl|mdm:103436921 1 252 + 252 Gaps:7 78.01 332 62.16 3e-110 uncharacterized LOC103436921
blastp_kegg lcl|fve:101301784 1 252 + 252 Gaps:8 80.88 319 62.02 3e-106 phosphatidylinositol-glycan biosynthesis class X protein-like
blastp_kegg lcl|pxb:103960436 1 252 + 252 Gaps:7 76.40 339 61.78 1e-103 phosphatidylinositol-glycan biosynthesis class X protein
blastp_kegg lcl|pop:POPTR_0003s09390g 1 252 + 252 Gaps:6 81.90 315 60.85 5e-102 POPTRDRAFT_554044 hypothetical protein
blastp_kegg lcl|cit:102610194 1 244 + 244 Gaps:6 75.99 329 61.60 7e-100 phosphatidylinositol-glycan biosynthesis class X protein-like
blastp_kegg lcl|vvi:100252266 2 252 + 251 Gaps:6 78.12 329 62.65 2e-95 uncharacterized LOC100252266
blastp_kegg lcl|tcc:TCM_016566 1 252 + 252 Gaps:6 82.43 313 57.75 1e-94 Phosphatidylinositol-glycan biosynthesis class X protein putative
blastp_kegg lcl|cam:101514077 1 252 + 252 Gaps:4 81.27 315 53.91 1e-88 phosphatidylinositol-glycan biosynthesis class X protein-like
blastp_uniprot_sprot sp|Q99LV7|PIGX_MOUSE 44 240 + 197 Gaps:24 81.50 254 28.50 7e-16 Phosphatidylinositol-glycan biosynthesis class X protein OS Mus musculus GN Pigx PE 2 SV 2
blastp_uniprot_sprot sp|Q60GF7|PIGX_RAT 44 240 + 197 Gaps:24 82.14 252 28.50 2e-15 Phosphatidylinositol-glycan biosynthesis class X protein OS Rattus norvegicus GN Pigx PE 1 SV 2
blastp_uniprot_sprot sp|Q8TBF5|PIGX_HUMAN 44 240 + 197 Gaps:20 80.23 258 26.57 9e-15 Phosphatidylinositol-glycan biosynthesis class X protein OS Homo sapiens GN PIGX PE 2 SV 3
rpsblast_cdd gnl|CDD|191998 53 235 + 183 Gaps:25 96.12 206 25.25 2e-14 pfam08320 PIG-X PIG-X / PBN1. Mammalian PIG-X and yeast PBN1 are essential components of glycosylphosphatidylinositol-mannosyltransferase I. These enzymes are involved in the transfer of sugar molecules.
rpsblast_cdd gnl|CDD|197872 57 234 + 178 Gaps:24 94.58 203 23.44 1e-12 smart00780 PIG-X PIG-X / PBN1. Mammalian PIG-X and yeast PBN1 are essential components of glycosylphosphatidylinositol-mannosyltransferase I. These enzymes are involved in the transfer of sugar molecules.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 52 235 184 PF08320 "UniPathway:UPA00196" PIG-X / PBN1 IPR013233
Phobius 1 216 216 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 217 240 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 50 241 192 SM00780 "UniPathway:UPA00196" PIG-X / PBN1 IPR013233
Phobius 241 252 12 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 218 240 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting