Protein : Qrob_P0112400.2 Q. robur
Protein Identifier  ? Qrob_P0112400.2 Organism . Name  Quercus robur
Score  68.0 Score Type  egn
Protein Description  (M=1) PTHR13844:SF3 - BRG-1 ASSOCIATED FACTOR 60 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 121  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101488707 31 120 + 90 Gaps:1 68.46 130 69.66 2e-38 upstream activation factor subunit UAF30-like
blastp_kegg lcl|mtr:MTR_5g025500 31 120 + 90 Gaps:1 66.42 134 67.42 3e-35 Upstream activation factor subunit UAF30
blastp_kegg lcl|vvi:100249480 11 118 + 108 Gaps:1 94.78 115 63.30 7e-35 upstream activation factor subunit spp27-like
blastp_kegg lcl|gmx:100779127 36 119 + 84 Gaps:1 62.88 132 73.49 1e-34 protein TRI1-like
blastp_kegg lcl|pvu:PHAVU_002G121400g 21 120 + 100 Gaps:1 75.57 131 61.62 2e-34 hypothetical protein
blastp_kegg lcl|gmx:100795307 36 120 + 85 Gaps:1 63.64 132 71.43 4e-34 upstream activation factor subunit UAF30-like
blastp_kegg lcl|pxb:103965010 30 119 + 90 Gaps:1 61.38 145 61.80 2e-32 upstream activation factor subunit spp27-like
blastp_kegg lcl|rcu:RCOM_1515600 39 120 + 82 none 61.19 134 67.07 2e-32 brg-1 associated factor putative
blastp_kegg lcl|pxb:103951656 31 119 + 89 Gaps:1 62.41 141 61.36 3e-32 upstream activation factor subunit spp27-like
blastp_kegg lcl|pmum:103331364 37 119 + 83 Gaps:1 55.03 149 67.07 6e-32 upstream activation factor subunit spp27-like
blastp_pdb 1uhr_A 46 112 + 67 Gaps:2 69.89 93 32.31 6e-07 mol:protein length:93 SWI/SNF related matrix associated actin dep
blastp_pdb 1v31_A 39 116 + 78 Gaps:2 81.72 93 28.95 4e-06 mol:protein length:93 hypothetical protein RAFL11-05-P19
blastp_uniprot_sprot sp|Q05024|TRI1_YEAST 36 116 + 81 Gaps:4 34.07 226 48.05 8e-14 Protein TRI1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TRI1 PE 1 SV 1
blastp_uniprot_sprot sp|O74503|UAF30_SCHPO 36 118 + 83 Gaps:2 34.76 233 39.51 4e-13 Upstream activation factor subunit spp27 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN spp27 PE 1 SV 1
blastp_uniprot_sprot sp|Q08747|UAF30_YEAST 32 116 + 85 Gaps:4 35.53 228 45.68 1e-11 Upstream activation factor subunit UAF30 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN UAF30 PE 1 SV 1
rpsblast_cdd gnl|CDD|145386 40 117 + 78 Gaps:2 100.00 76 55.26 3e-19 pfam02201 SWIB SWIB/MDM2 domain. This family includes the SWIB domain and the MDM2 domain. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2.
rpsblast_cdd gnl|CDD|128456 40 118 + 79 Gaps:2 100.00 77 46.75 2e-17 smart00151 SWIB SWI complex BAF60b domains.
rpsblast_cdd gnl|CDD|180527 14 118 + 105 Gaps:6 11.51 860 37.37 2e-13 PRK06319 PRK06319 DNA topoisomerase I/SWI domain fusion protein Validated.
rpsblast_cdd gnl|CDD|35090 20 118 + 99 Gaps:2 40.93 237 35.05 3e-12 COG5531 COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics].
rpsblast_cdd gnl|CDD|184805 20 115 + 96 Gaps:2 9.52 987 31.91 2e-10 PRK14724 PRK14724 DNA topoisomerase III Provisional.
rpsblast_kog gnl|CDD|37157 14 118 + 105 Gaps:2 42.92 240 41.75 4e-18 KOG1946 KOG1946 KOG1946 RNA polymerase I transcription factor UAF [Transcription].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 19 22 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 22 118 97 PTHR13844 none none none
Phobius 23 120 98 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 22 118 97 PTHR13844:SF3 none none none
Gene3D 33 119 87 G3DSA:1.10.245.10 none none IPR003121
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 39 118 80 SSF47592 none none IPR003121
Phobius 10 18 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SMART 40 120 81 SM00151 none SWI complex, BAF60b domains IPR019835
Pfam 41 117 77 PF02201 none SWIB/MDM2 domain IPR003121

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting