Protein : Qrob_P0112320.2 Q. robur
Protein Identifier  ? Qrob_P0112320.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR19241//PTHR19241:SF195 - ATP-BINDING CASSETTE TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 650  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100247745 1 649 + 649 Gaps:3 99.24 657 85.89 0.0 ABC transporter G family member 14-like
blastp_kegg lcl|pop:POPTR_0004s24450g 3 649 + 647 Gaps:4 98.93 656 85.98 0.0 ABC transporter family protein
blastp_kegg lcl|pop:POPTR_0003s03650g 3 649 + 647 Gaps:4 98.93 656 86.90 0.0 POPTRDRAFT_415196 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0867870 19 649 + 631 Gaps:3 100.00 634 85.65 0.0 ATP-binding cassette transporter putative (EC:3.6.3.28)
blastp_kegg lcl|tcc:TCM_016689 1 649 + 649 Gaps:4 99.24 656 84.33 0.0 ATP-binding cassette 14
blastp_kegg lcl|gmx:100780191 1 647 + 647 Gaps:7 99.24 659 82.42 0.0 ABC transporter G family member 14-like
blastp_kegg lcl|gmx:100794774 1 647 + 647 Gaps:8 99.24 660 81.83 0.0 ABC transporter G family member 14-like
blastp_kegg lcl|pvu:PHAVU_002G121200g 1 647 + 647 Gaps:6 99.24 658 81.93 0.0 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10007027mg 1 649 + 649 Gaps:6 99.23 648 79.63 0.0 hypothetical protein
blastp_kegg lcl|crb:CARUB_v10008545mg 1 649 + 649 Gaps:6 99.23 648 79.47 0.0 hypothetical protein
blastp_pdb 2yz2_B 71 302 + 232 Gaps:15 84.59 266 31.56 2e-20 mol:protein length:266 Putative ABC transporter ATP-binding protein
blastp_pdb 2yz2_A 71 302 + 232 Gaps:15 84.59 266 31.56 2e-20 mol:protein length:266 Putative ABC transporter ATP-binding protein
blastp_pdb 2it1_B 47 283 + 237 Gaps:35 61.88 362 34.82 4e-20 mol:protein length:362 362aa long hypothetical maltose/maltodextrin
blastp_pdb 2it1_A 47 283 + 237 Gaps:35 61.88 362 34.82 4e-20 mol:protein length:362 362aa long hypothetical maltose/maltodextrin
blastp_pdb 2pcl_A 77 258 + 182 Gaps:23 80.80 224 36.46 7e-19 mol:protein length:224 Lipoprotein-releasing system ATP-binding prot
blastp_pdb 2pcj_B 77 258 + 182 Gaps:23 80.80 224 36.46 7e-19 mol:protein length:224 Lipoprotein-releasing system ATP-binding prot
blastp_pdb 2pcj_A 77 258 + 182 Gaps:23 80.80 224 36.46 7e-19 mol:protein length:224 Lipoprotein-releasing system ATP-binding prot
blastp_pdb 2d62_A 85 291 + 207 Gaps:27 57.07 375 31.78 4e-18 mol:protein length:375 multiple sugar-binding transport ATP-binding
blastp_pdb 1g29_2 85 291 + 207 Gaps:29 57.53 372 34.58 1e-17 mol:protein length:372 MALTOSE TRANSPORT PROTEIN MALK
blastp_pdb 1g29_1 85 291 + 207 Gaps:29 57.53 372 34.58 1e-17 mol:protein length:372 MALTOSE TRANSPORT PROTEIN MALK
blastp_uniprot_sprot sp|Q9C6W5|AB14G_ARATH 1 649 + 649 Gaps:6 99.23 648 79.63 0.0 ABC transporter G family member 14 OS Arabidopsis thaliana GN ABCG14 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XA72|AB21G_ARATH 3 646 + 644 Gaps:17 96.58 672 59.01 0.0 ABC transporter G family member 21 OS Arabidopsis thaliana GN ABCG21 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SZR9|AB9G_ARATH 38 646 + 609 Gaps:18 95.14 638 55.85 0.0 ABC transporter G family member 9 OS Arabidopsis thaliana GN ABCG9 PE 3 SV 2
blastp_uniprot_sprot sp|Q93YS4|AB22G_ARATH 46 648 + 603 Gaps:43 79.36 751 51.68 0.0 ABC transporter G family member 22 OS Arabidopsis thaliana GN ABCG22 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FT51|AB27G_ARATH 7 648 + 642 Gaps:39 85.89 737 49.13 0.0 ABC transporter G family member 27 OS Arabidopsis thaliana GN ABCG27 PE 2 SV 1
blastp_uniprot_sprot sp|Q84TH5|AB25G_ARATH 18 647 + 630 Gaps:46 98.49 662 47.09 0.0 ABC transporter G family member 25 OS Arabidopsis thaliana GN ABCG25 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK50|AB26G_ARATH 46 645 + 600 Gaps:27 90.07 685 45.22 3e-172 ABC transporter G family member 26 OS Arabidopsis thaliana GN ABCG26 PE 3 SV 2
blastp_uniprot_sprot sp|Q8MIB3|ABCG2_PIG 49 593 + 545 Gaps:29 83.84 656 34.91 3e-93 ATP-binding cassette sub-family G member 2 OS Sus scrofa GN ABCG2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UNQ0|ABCG2_HUMAN 49 643 + 595 Gaps:49 93.44 655 34.15 2e-92 ATP-binding cassette sub-family G member 2 OS Homo sapiens GN ABCG2 PE 1 SV 3
blastp_uniprot_sprot sp|Q5MB13|ABCG2_MACMU 49 643 + 595 Gaps:38 93.43 654 33.55 2e-92 ATP-binding cassette sub-family G member 2 OS Macaca mulatta GN ABCG2 PE 2 SV 1

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 386 591 206 PF01061 none ABC-2 type transporter IPR013525
Phobius 424 434 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 45 648 604 PTHR19241:SF195 none none none
PANTHER 1 11 11 PTHR19241:SF195 none none none
Phobius 1 405 405 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 545 563 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 200 214 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 406 423 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 539 544 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 45 648 604 PTHR19241 none none none
PANTHER 1 11 11 PTHR19241 none none none
Phobius 458 477 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 73 295 223 SSF52540 none none IPR027417
Phobius 478 502 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 564 620 57 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 72 289 218 G3DSA:3.40.50.300 none none IPR027417
SMART 87 277 191 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Phobius 435 457 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 644 649 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 514 538 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 503 513 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 621 643 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 49 300 252 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Pfam 78 228 151 PF00005 none ABC transporter IPR003439

6 Localization

Analysis Start End Length
TMHMM 435 457 22
TMHMM 515 537 22
TMHMM 544 566 22
TMHMM 486 505 19
TMHMM 403 425 22
TMHMM 621 643 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting