Protein : Qrob_P0112230.2 Q. robur
Protein Identifier  ? Qrob_P0112230.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=54) PF01535//PF13041//PF13812 - PPR repeat // PPR repeat family // Pentatricopeptide repeat domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 941  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100246073 21 940 + 920 Gaps:28 100.00 828 75.60 0.0 pentatricopeptide repeat-containing protein At4g19220 mitochondrial-like
blastp_kegg lcl|tcc:TCM_016699 49 938 + 890 Gaps:5 93.28 953 65.35 0.0 Tetratricopeptide repeat-like superfamily protein putative
blastp_kegg lcl|cit:102614355 49 940 + 892 Gaps:3 95.11 941 64.47 0.0 pentatricopeptide repeat-containing protein At4g19220 mitochondrial-like
blastp_kegg lcl|cic:CICLE_v10013459mg 72 940 + 869 Gaps:1 100.00 870 64.83 0.0 hypothetical protein
blastp_kegg lcl|gmx:100775736 5 939 + 935 Gaps:18 99.68 944 58.77 0.0 pentatricopeptide repeat-containing protein At4g19220 mitochondrial-like
blastp_kegg lcl|pvu:PHAVU_002G121900g 45 939 + 895 Gaps:14 96.24 930 60.11 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_5g025580 38 940 + 903 Gaps:7 94.87 955 58.50 0.0 Pentatricopeptide repeat-containing protein
blastp_kegg lcl|cam:101490356 23 940 + 918 Gaps:16 97.67 944 57.92 0.0 pentatricopeptide repeat-containing protein At4g19220 mitochondrial-like
blastp_kegg lcl|sly:101245576 27 938 + 912 Gaps:9 96.79 935 55.36 0.0 pentatricopeptide repeat-containing protein At4g19220 mitochondrial-like
blastp_kegg lcl|crb:CARUB_v10006949mg 39 937 + 899 Gaps:15 86.96 1028 52.80 0.0 hypothetical protein
blastp_uniprot_sprot sp|O49680|PP324_ARATH 39 937 + 899 Gaps:14 93.90 951 52.07 0.0 Pentatricopeptide repeat-containing protein At4g19220 mitochondrial OS Arabidopsis thaliana GN PCMP-E2 PE 3 SV 2
blastp_uniprot_sprot sp|Q0WN60|PPR48_ARATH 62 937 + 876 Gaps:86 78.14 970 53.43 8e-137 Pentatricopeptide repeat-containing protein At1g18485 OS Arabidopsis thaliana GN PCMP-H8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SVP7|PP307_ARATH 45 937 + 893 Gaps:135 80.45 1064 51.64 3e-136 Pentatricopeptide repeat-containing protein At4g13650 OS Arabidopsis thaliana GN PCMP-H42 PE 2 SV 2
blastp_uniprot_sprot sp|Q9STE1|PP333_ARATH 90 937 + 848 Gaps:46 87.63 857 46.87 6e-133 Pentatricopeptide repeat-containing protein At4g21300 OS Arabidopsis thaliana GN PCMP-E36 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SS60|PP210_ARATH 62 938 + 877 Gaps:73 84.13 882 50.54 7e-132 Pentatricopeptide repeat-containing protein At3g03580 OS Arabidopsis thaliana GN PCMP-H23 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SVA5|PP357_ARATH 64 937 + 874 Gaps:61 88.13 834 50.61 3e-131 Pentatricopeptide repeat-containing protein At4g39530 OS Arabidopsis thaliana GN PCMP-E52 PE 1 SV 1
blastp_uniprot_sprot sp|O80647|PP195_ARATH 58 898 + 841 Gaps:63 96.89 836 48.89 5e-131 Pentatricopeptide repeat-containing protein At2g39620 OS Arabidopsis thaliana GN PCMP-E33 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SN39|PP320_ARATH 107 937 + 831 Gaps:56 78.87 871 53.86 2e-128 Pentatricopeptide repeat-containing protein At4g18750 chloroplastic OS Arabidopsis thaliana GN PCMP-H45 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CA56|PP121_ARATH 34 935 + 902 Gaps:158 93.74 895 54.47 8e-125 Pentatricopeptide repeat-containing protein At1g74600 chloroplastic OS Arabidopsis thaliana GN PCMP-E69 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SVH0|PP329_ARATH 58 938 + 881 Gaps:202 95.74 774 50.47 9e-125 Pentatricopeptide repeat-containing protein At4g20770 OS Arabidopsis thaliana GN PCMP-E35 PE 3 SV 2
rpsblast_cdd gnl|CDD|178626 90 937 + 848 Gaps:58 79.23 857 58.32 1e-136 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|178630 73 938 + 866 Gaps:89 69.87 697 50.72 7e-76 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|178757 539 827 + 289 Gaps:53 25.28 1060 23.51 3e-08 PLN03218 PLN03218 maturation of RBCL 1 Provisional.

56 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 353 383 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 757 791 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 327 350 24 PF13812 none Pentatricopeptide repeat domain IPR002885
ProSiteProfiles 118 148 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 455 485 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 46 82 37 PTHR24015:SF402 none none none
ProSiteProfiles 860 890 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 557 587 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 726 756 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Gene3D 319 379 61 G3DSA:1.25.40.10 none none IPR011990
Gene3D 146 179 34 G3DSA:1.25.40.10 none none IPR011990
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 691 725 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 424 454 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 148 360 213 PTHR24015 none none none
Gene3D 442 477 36 G3DSA:1.25.40.10 none none IPR011990
Gene3D 524 581 58 G3DSA:1.25.40.10 none none IPR011990
Gene3D 723 787 65 G3DSA:1.25.40.10 none none IPR011990
Gene3D 631 688 58 G3DSA:1.25.40.10 none none IPR011990
PANTHER 148 360 213 PTHR24015:SF402 none none none
PANTHER 617 937 321 PTHR24015:SF402 none none none
ProSiteProfiles 322 352 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 219 249 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 352 401 50 PF13041 none PPR repeat family IPR002885
Pfam 757 804 48 PF13041 none PPR repeat family IPR002885
Pfam 633 654 22 PF01535 none PPR repeat IPR002885
Pfam 223 249 27 PF01535 none PPR repeat IPR002885
Pfam 457 482 26 PF01535 none PPR repeat IPR002885
Pfam 834 857 24 PF01535 none PPR repeat IPR002885
Pfam 662 686 25 PF01535 none PPR repeat IPR002885

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 64   Mitochondrion 5 0.188 0.368 NON-PLANT 64