Protein : Qrob_P0112200.2 Q. robur
Protein Identifier  ? Qrob_P0112200.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) PTHR10994//PTHR10994:SF58 - RETICULON // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 431  
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa002815mg 4 409 + 406 Gaps:32 60.95 630 79.17 0.0 hypothetical protein
blastp_kegg lcl|pxb:103952897 4 409 + 406 Gaps:34 60.44 632 78.01 0.0 uncharacterized LOC103952897
blastp_kegg lcl|mdm:103429549 5 409 + 405 Gaps:32 60.79 630 77.81 0.0 uncharacterized LOC103429549
blastp_kegg lcl|rcu:RCOM_0867590 5 409 + 405 Gaps:17 61.35 639 74.23 0.0 reticulon3-A3 putative
blastp_kegg lcl|sot:102605574 5 409 + 405 Gaps:24 61.26 635 75.06 0.0 uncharacterized LOC102605574
blastp_kegg lcl|fve:101298609 5 409 + 405 Gaps:33 60.73 629 78.27 0.0 uncharacterized protein LOC101298609
blastp_kegg lcl|pvu:PHAVU_003G278500g 5 409 + 405 Gaps:25 87.00 446 77.06 0.0 hypothetical protein
blastp_kegg lcl|sly:101254412 5 409 + 405 Gaps:24 61.26 635 75.84 0.0 uncharacterized LOC101254412
blastp_kegg lcl|brp:103865462 4 409 + 406 Gaps:24 61.49 644 73.48 0.0 uncharacterized LOC103865462
blastp_kegg lcl|brp:103867343 4 409 + 406 Gaps:25 61.43 643 73.92 0.0 uncharacterized LOC103867343
rpsblast_cdd gnl|CDD|190628 154 393 + 240 Gaps:46 99.04 208 33.98 2e-38 pfam03407 Nucleotid_trans Nucleotide-diphospho-sugar transferase. Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 20 42 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 97 228 132 PTHR10994:SF58 none none none
PANTHER 244 412 169 PTHR10994:SF58 none none none
Phobius 43 430 388 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 97 228 132 PTHR10994 none none IPR003388
PANTHER 244 412 169 PTHR10994 none none IPR003388
Pfam 154 393 240 PF03407 none Nucleotide-diphospho-sugar transferase IPR005069
Phobius 1 19 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
TMHMM 20 42 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 33   Secretory pathway 3 0.683 0.141 NON-PLANT 33