Protein : Qrob_P0112080.2 Q. robur
Protein Identifier  ? Qrob_P0112080.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED (PTHR31375:SF3) Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 188  
Kegg Orthology  K01213
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_018359 25 183 + 159 Gaps:3 34.36 454 55.77 1e-51 Polygalacturonase-like protein putative
blastp_kegg lcl|cmo:103498735 25 179 + 155 Gaps:9 51.63 306 55.70 7e-48 probable polygalacturonase At1g80170
blastp_kegg lcl|vvi:100250150 25 187 + 163 Gaps:10 39.95 771 49.35 1e-40 polygalacturonase-like
blastp_kegg lcl|csv:101232430 25 143 + 119 Gaps:3 42.80 271 61.21 2e-40 polygalacturonase ADPG1-like
blastp_kegg lcl|pxb:103946805 25 178 + 154 Gaps:1 38.35 399 47.71 4e-37 probable polygalacturonase At3g15720
blastp_kegg lcl|atr:s00104p00026540 25 177 + 153 Gaps:3 31.25 480 47.33 2e-36 AMTR_s00104p00026540 hypothetical protein
blastp_kegg lcl|pmum:103339472 25 176 + 152 Gaps:7 37.53 397 51.01 3e-36 probable polygalacturonase At3g15720
blastp_kegg lcl|pmum:103327788 23 181 + 159 Gaps:2 51.64 304 45.86 8e-36 polygalacturonase-like
blastp_kegg lcl|pper:PRUPE_ppa018519mg 25 176 + 152 Gaps:7 36.79 405 50.34 3e-35 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0899050 25 184 + 160 Gaps:10 37.92 770 46.92 9e-35 polygalacturonase putative (EC:3.2.1.15 3.2.1.67)
blastp_uniprot_sprot sp|O22818|PGLR6_ARATH 25 177 + 153 Gaps:7 36.54 405 45.95 2e-30 Probable polygalacturonase At2g43860 OS Arabidopsis thaliana GN At2g43860 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 25 183 + 159 Gaps:3 35.09 456 41.88 1e-28 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 5 172 + 168 Gaps:3 38.04 439 41.92 2e-28 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 25 172 + 148 Gaps:3 28.21 514 43.45 3e-28 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 25 179 + 155 Gaps:3 34.23 444 40.79 9e-28 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|P48978|PGLR_MALDO 25 148 + 124 Gaps:1 26.74 460 46.34 2e-27 Polygalacturonase OS Malus domestica PE 2 SV 1
blastp_uniprot_sprot sp|P43212|PGLR2_CRYJA 25 173 + 149 Gaps:3 28.40 514 42.47 8e-27 Polygalacturonase OS Cryptomeria japonica PE 1 SV 1
blastp_uniprot_sprot sp|Q02096|PGLR_PERAE 25 168 + 144 Gaps:5 30.95 462 47.55 1e-26 Polygalacturonase OS Persea americana PE 2 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 25 172 + 148 Gaps:3 31.05 467 42.76 9e-26 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 25 172 + 148 Gaps:5 36.90 393 40.00 3e-25 Polygalacturonase OS Prunus persica PE 2 SV 1
rpsblast_cdd gnl|CDD|178390 14 181 + 168 Gaps:11 35.44 443 43.95 2e-29 PLN02793 PLN02793 Probable polygalacturonase.
rpsblast_cdd gnl|CDD|178580 25 177 + 153 Gaps:3 33.77 456 43.51 1e-27 PLN03003 PLN03003 Probable polygalacturonase At3g15720.
rpsblast_cdd gnl|CDD|178586 25 164 + 140 Gaps:3 33.50 409 46.72 6e-25 PLN03010 PLN03010 polygalacturonase.
rpsblast_cdd gnl|CDD|144034 25 162 + 138 Gaps:7 40.31 325 41.98 2e-23 pfam00295 Glyco_hydro_28 Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A) EC:3.2.1.-. These enzymes is important in cell wall metabolism.
rpsblast_cdd gnl|CDD|177840 14 176 + 163 Gaps:12 38.37 404 40.65 5e-23 PLN02188 PLN02188 polygalacturonase/glycoside hydrolase family protein.
rpsblast_cdd gnl|CDD|177865 25 172 + 148 Gaps:9 32.25 431 43.88 1e-22 PLN02218 PLN02218 polygalacturonase ADPG.
rpsblast_cdd gnl|CDD|165802 25 178 + 154 Gaps:5 38.32 394 39.74 2e-20 PLN02155 PLN02155 polygalacturonase.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 25 164 140 G3DSA:2.160.20.10 none none IPR012334
Pfam 25 162 138 PF00295 none Glycosyl hydrolases family 28 IPR000743
PANTHER 14 181 168 PTHR31375 none none none
SUPERFAMILY 24 178 155 SSF51126 none none IPR011050
PANTHER 14 181 168 PTHR31375:SF3 none none none

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting