Protein : Qrob_P0111100.2 Q. robur
Protein Identifier  ? Qrob_P0111100.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF00400//PF00637 - WD domain, G-beta repeat // Region in Clathrin and VPS Gene Prediction Quality  validated
Protein length 

Sequence

Length: 870  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244792 4 869 + 866 Gaps:4 90.21 960 87.30 0.0 vacuolar protein sorting-associated protein 41 homolog
blastp_kegg lcl|pxb:103961630 4 869 + 866 Gaps:4 90.61 958 86.06 0.0 vacuolar protein sorting-associated protein 41 homolog
blastp_kegg lcl|cit:102622104 4 869 + 866 Gaps:8 91.08 953 86.87 0.0 vacuolar protein sorting-associated protein 41 homolog
blastp_kegg lcl|pmum:103326398 4 869 + 866 Gaps:4 90.32 961 86.75 0.0 vacuolar protein sorting-associated protein 41 homolog
blastp_kegg lcl|tcc:TCM_041555 4 869 + 866 Gaps:2 90.59 956 86.49 0.0 Vacuolar protein sorting-associated protein 41 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa000938mg 4 869 + 866 Gaps:13 89.95 955 87.19 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0476150 4 869 + 866 Gaps:5 90.37 955 85.86 0.0 vacuolar protein sorting vps41 putative
blastp_kegg lcl|pxb:103947739 4 869 + 866 Gaps:4 90.40 958 85.45 0.0 vacuolar protein sorting-associated protein 41 homolog
blastp_kegg lcl|mdm:103448026 4 869 + 866 Gaps:6 90.34 963 85.40 0.0 vacuolar protein sorting-associated protein 41 homolog
blastp_kegg lcl|pop:POPTR_0001s22040g 4 869 + 866 Gaps:10 90.53 950 86.16 0.0 POPTRDRAFT_181203 vacuolar assembly family protein
blastp_uniprot_sprot sp|P93231|VPS41_SOLLC 4 869 + 866 Gaps:10 91.25 960 80.02 0.0 Vacuolar protein sorting-associated protein 41 homolog OS Solanum lycopersicum GN VPS41 PE 2 SV 1
blastp_uniprot_sprot sp|P93043|VPS41_ARATH 4 869 + 866 Gaps:36 90.41 980 76.64 0.0 Vacuolar protein sorting-associated protein 41 homolog OS Arabidopsis thaliana GN VPS41 PE 3 SV 3
blastp_uniprot_sprot sp|P49754|VPS41_HUMAN 5 834 + 830 Gaps:94 89.93 854 39.19 1e-163 Vacuolar protein sorting-associated protein 41 homolog OS Homo sapiens GN VPS41 PE 1 SV 3
blastp_uniprot_sprot sp|Q5KU39|VPS41_MOUSE 5 814 + 810 Gaps:88 87.46 853 39.54 2e-163 Vacuolar protein sorting-associated protein 41 homolog OS Mus musculus GN Vps41 PE 2 SV 1
blastp_uniprot_sprot sp|Q9P7N3|VPS41_SCHPO 2 744 + 743 Gaps:50 82.32 871 31.80 3e-117 Vacuolar protein sorting-associated protein 41 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vps41 PE 3 SV 2
blastp_uniprot_sprot sp|Q19954|VPS41_CAEEL 3 813 + 811 Gaps:119 86.79 901 28.01 1e-67 Vacuolar protein sorting-associated protein 41 homolog OS Caenorhabditis elegans GN vps-41 PE 3 SV 4
blastp_uniprot_sprot sp|Q618H8|VPS41_CAEBR 3 723 + 721 Gaps:121 79.96 898 29.11 3e-64 Vacuolar protein sorting-associated protein 41 homolog OS Caenorhabditis briggsae GN vps-41 PE 3 SV 1
blastp_uniprot_sprot sp|P38959|VPS41_YEAST 4 675 + 672 Gaps:132 76.21 992 22.09 4e-42 Vacuolar protein sorting-associated protein 41 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN VPS41 PE 1 SV 2
rpsblast_cdd gnl|CDD|128594 526 669 + 144 Gaps:8 100.00 140 29.29 3e-21 smart00299 CLH Clathrin heavy chain repeat homology.
rpsblast_cdd gnl|CDD|201364 526 669 + 144 Gaps:8 97.90 143 31.43 1e-15 pfam00637 Clathrin Region in Clathrin and VPS. Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
rpsblast_kog gnl|CDD|37277 18 843 + 826 Gaps:77 90.19 846 51.25 0.0 KOG2066 KOG2066 KOG2066 Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|37245 309 847 + 539 Gaps:81 57.52 911 20.99 1e-11 KOG2034 KOG2034 KOG2034 Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking secretion and vesicular transport].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 4 37 34 PF00400 none WD domain, G-beta repeat IPR001680
PIRSF 1 827 827 PIRSF028921 none none IPR016902
ProSiteProfiles 526 673 148 PS50236 none Clathrin heavy-chain (CHCR) repeat profile. IPR000547
Pfam 536 669 134 PF00637 none Region in Clathrin and VPS IPR000547
PANTHER 6 749 744 PTHR12616 none none none
PANTHER 781 816 36 PTHR12616 none none none
SMART 526 673 148 SM00299 none Clathrin heavy chain repeat homology IPR000547
SUPERFAMILY 4 182 179 SSF50978 none none IPR017986
Gene3D 4 178 175 G3DSA:2.130.10.10 none none IPR015943
Gene3D 580 708 129 G3DSA:1.25.40.10 none none IPR011990
SUPERFAMILY 785 817 33 SSF57850 none none none

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting