Protein : Qrob_P0108340.2 Q. robur
Protein Identifier  ? Qrob_P0108340.2 Organism . Name  Quercus robur
Score  79.1 Score Type  egn
Protein Description  (M=1) KOG0078//KOG0079//KOG0080//KOG0081//KOG0083//KOG0084//KOG0091//KOG0092//KOG0094//KOG0095 - GTP-binding protein SEC4 small G protein superfamily and related Ras family GTP-binding proteins [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport]. // GTP-binding protein H-ray small G protein superfamily [General function prediction only]. // GTPase Rab18 small G protein superfamily [General function prediction only]. // GTPase Rab27 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab26/Rab37 small G protein superfamily [General function prediction only]. // GTPase Rab1/YPT1 small G protein superfamily and related GTP-binding proteins [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport]. // GTPase Rab39 small G protein superfamily [General function prediction only]. // GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab6/YPT6/Ryh1 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab30 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 280  
Kegg Orthology  K07901
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0007264 small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pda:103720006 1 279 + 279 Gaps:28 100.00 251 82.07 1e-133 ras-related protein RABE1c-like
blastp_kegg lcl|mus:103972266 11 279 + 269 Gaps:34 95.92 245 85.53 6e-132 ras-related protein RABE1c isoform X1
blastp_kegg lcl|brp:103856601 1 279 + 279 Gaps:37 100.00 246 79.27 5e-122 ras-related protein RABE1c-like
blastp_kegg lcl|mtr:MTR_4g063160 1 278 + 278 Gaps:62 100.00 216 89.35 5e-117 Small GTP-binding protein
blastp_kegg lcl|brp:103851543 11 279 + 269 Gaps:41 95.83 240 76.96 1e-110 ras-related protein RABE1c-like
blastp_kegg lcl|cam:101497052 5 252 + 248 Gaps:90 74.39 285 80.19 2e-99 ras-related protein RABE1a-like
blastp_kegg lcl|gmx:100816795 11 279 + 269 Gaps:63 95.37 216 82.52 2e-98 ras-related protein RABE1c-like
blastp_kegg lcl|sot:102587980 11 279 + 269 Gaps:63 95.37 216 82.04 4e-98 ras-related protein RABE1a-like
blastp_kegg lcl|sly:101267153 11 279 + 269 Gaps:63 95.37 216 82.04 4e-98 ras-related protein RABE1a-like
blastp_kegg lcl|bdi:100837482 11 279 + 269 Gaps:65 95.33 214 79.90 2e-91 ras-related protein RABE1c-like
blastp_pdb 2rhd_A 11 244 + 234 Gaps:66 97.14 175 58.24 4e-45 mol:protein length:175 Small GTP binding protein rab1a
blastp_pdb 2g6b_A 12 243 + 232 Gaps:65 93.89 180 50.89 2e-43 mol:protein length:180 Ras-related protein Rab-26
blastp_pdb 2fu5_D 12 244 + 233 Gaps:68 92.35 183 56.21 5e-39 mol:protein length:183 Ras-related protein Rab-8A
blastp_pdb 2fu5_C 12 244 + 233 Gaps:68 92.35 183 56.21 5e-39 mol:protein length:183 Ras-related protein Rab-8A
blastp_pdb 3tnf_A 146 244 + 99 Gaps:1 56.32 174 64.29 5e-39 mol:protein length:174 Ras-related protein Rab-8A
blastp_pdb 3qbt_G 146 244 + 99 Gaps:1 56.32 174 64.29 5e-39 mol:protein length:174 Ras-related protein Rab-8A
blastp_pdb 3qbt_E 146 244 + 99 Gaps:1 56.32 174 64.29 5e-39 mol:protein length:174 Ras-related protein Rab-8A
blastp_pdb 3qbt_C 146 244 + 99 Gaps:1 56.32 174 64.29 5e-39 mol:protein length:174 Ras-related protein Rab-8A
blastp_pdb 3qbt_A 146 244 + 99 Gaps:1 56.32 174 64.29 5e-39 mol:protein length:174 Ras-related protein Rab-8A
blastp_pdb 3l0i_D 4 245 + 242 Gaps:1 89.45 199 63.48 5e-37 mol:protein length:199 Ras-related protein Rab-1A
blastp_uniprot_sprot sp|P28186|RAE1C_ARATH 11 279 + 269 none 95.37 216 95.15 6e-86 Ras-related protein RABE1c OS Arabidopsis thaliana GN RABE1C PE 1 SV 1
blastp_uniprot_sprot sp|O24466|RAE1A_ARATH 11 279 + 269 none 95.37 216 93.20 5e-83 Ras-related protein RABE1a OS Arabidopsis thaliana GN RABE1A PE 1 SV 1
blastp_uniprot_sprot sp|Q39433|RB1BV_BETVU 11 279 + 269 Gaps:3 95.35 215 91.71 3e-74 Ras-related protein RAB1BV OS Beta vulgaris GN RAB1BV PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZD4|RAE1D_ARATH 1 277 + 277 Gaps:1 98.61 216 86.85 9e-73 Ras-related protein RABE1d OS Arabidopsis thaliana GN RABE1D PE 1 SV 1
blastp_uniprot_sprot sp|Q9SF91|RAE1E_ARATH 1 277 + 277 Gaps:1 98.62 218 84.65 3e-70 Ras-related protein RABE1e OS Arabidopsis thaliana GN RABE1E PE 1 SV 1
blastp_uniprot_sprot sp|P36861|YPTV2_VOLCA 1 277 + 277 Gaps:69 99.54 217 52.31 1e-58 GTP-binding protein yptV2 OS Volvox carteri GN YPTV2 PE 3 SV 1
blastp_uniprot_sprot sp|P41924|RYL1_YARLI 6 277 + 272 Gaps:70 99.51 203 55.94 9e-51 Ras-like GTP-binding protein RYL1 OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN RYL1 PE 3 SV 1
blastp_uniprot_sprot sp|P20790|RAB8A_DICDI 1 277 + 277 Gaps:6 100.00 208 73.56 5e-49 Ras-related protein Rab-8A OS Dictyostelium discoideum GN rab8A PE 3 SV 1
blastp_uniprot_sprot sp|P20791|RAB8B_DICDI 1 277 + 277 Gaps:18 100.00 203 73.40 2e-47 Ras-related protein Rab-8B OS Dictyostelium discoideum GN rab8B PE 2 SV 1
blastp_uniprot_sprot sp|Q29RR0|RAB26_BOVIN 12 277 + 266 Gaps:73 76.17 256 49.74 7e-45 Ras-related protein Rab-26 OS Bos taurus GN RAB26 PE 2 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 11 277 267 PS51419 none small GTPase Rab1 family profile. none
SMART 18 243 226 SM00174 "Reactome:REACT_11044" Rho (Ras homology) subfamily of Ras-like small GTPases IPR003578
Pfam 146 241 96 PF00071 none Ras family IPR001806
Pfam 17 86 70 PF00071 none Ras family IPR001806
TIGRFAM 14 100 87 TIGR00231 none small_GTP: small GTP-binding protein domain IPR005225
SMART 17 243 227 SM00173 none Ras subfamily of RAS small GTPases IPR020849
SMART 16 243 228 SM00175 none Rab subfamily of small GTPases IPR003579
SUPERFAMILY 11 82 72 SSF52540 none none IPR027417
SUPERFAMILY 146 253 108 SSF52540 none none IPR027417
PRINTS 39 55 17 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 57 79 23 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 16 37 22 PR00449 none Transforming protein P21 ras signature IPR001806
Gene3D 148 277 130 G3DSA:3.40.50.300 none none IPR027417
Gene3D 8 84 77 G3DSA:3.40.50.300 none none IPR027417
PANTHER 145 277 133 PTHR24073 none none none
PANTHER 8 81 74 PTHR24073 none none none
PANTHER 8 81 74 PTHR24073:SF380 none none none
PANTHER 145 277 133 PTHR24073:SF380 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting