Protein : Qrob_P0107190.2 Q. robur
Protein Identifier  ? Qrob_P0107190.2 Organism . Name  Quercus robur
Score  15.1 Score Type  egn
Protein Description  (M=3) K08737 - DNA mismatch repair protein MSH6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1241  
Kegg Orthology  K08737
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|eus:EUTSA_v10028364mg 1 1216 + 1216 Gaps:127 98.73 1336 59.51 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s19530g 1 1056 + 1056 Gaps:98 96.87 1055 64.58 0.0 POPTRDRAFT_766699 hypothetical protein
blastp_kegg lcl|pmum:103334050 4 1236 + 1233 Gaps:46 92.54 1274 73.88 0.0 DNA mismatch repair protein MSH6
blastp_kegg lcl|pper:PRUPE_ppa000344mg 1 1239 + 1239 Gaps:59 92.79 1263 74.49 0.0 hypothetical protein
blastp_kegg lcl|pxb:103967167 1 1239 + 1239 Gaps:75 93.02 1303 71.62 0.0 DNA mismatch repair protein MSH6
blastp_kegg lcl|tcc:TCM_004795 1 1239 + 1239 Gaps:68 99.92 1316 70.19 0.0 MUTS isoform 1
blastp_kegg lcl|mdm:103408170 1 1054 + 1054 Gaps:78 90.38 1175 70.43 0.0 DNA mismatch repair protein MSH6-like
blastp_kegg lcl|pop:POPTR_0014s11690g 1 1238 + 1238 Gaps:53 97.60 1293 71.79 0.0 POPTRDRAFT_572625 DNA mismatch repair protein MSH6-1
blastp_kegg lcl|rcu:RCOM_1347370 1 1240 + 1240 Gaps:42 97.63 1306 70.12 0.0 ATP binding protein putative
blastp_kegg lcl|vvi:100255608 1 1239 + 1239 Gaps:87 97.53 1297 71.15 0.0 DNA mismatch repair protein Msh6-1-like
blastp_pdb 2o8f_B 317 1175 + 859 Gaps:43 83.46 1022 43.49 3e-107 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8e_B 317 1175 + 859 Gaps:43 83.46 1022 43.49 3e-107 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8d_B 317 1175 + 859 Gaps:43 83.46 1022 43.49 3e-107 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8c_B 317 1175 + 859 Gaps:43 83.46 1022 43.49 3e-107 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8b_B 317 1175 + 859 Gaps:43 83.46 1022 43.49 3e-107 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 3thz_B 327 1185 + 859 Gaps:159 96.95 918 30.45 1e-84 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 3thy_B 327 1185 + 859 Gaps:159 96.95 918 30.45 1e-84 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 3thx_B 327 1185 + 859 Gaps:159 96.95 918 30.45 1e-84 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 3thw_B 327 1185 + 859 Gaps:159 96.95 918 30.45 1e-84 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 1ewr_B 670 1169 + 500 Gaps:75 78.43 649 32.61 4e-52 mol:protein length:649 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_uniprot_sprot sp|O04716|MSH6_ARATH 1 1184 + 1184 Gaps:77 94.41 1324 65.12 0.0 DNA mismatch repair protein MSH6 OS Arabidopsis thaliana GN MSH6 PE 1 SV 2
blastp_uniprot_sprot sp|O74502|MSH6_SCHPO 320 1187 + 868 Gaps:101 69.78 1254 35.31 3e-153 DNA mismatch repair protein msh6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN msh6 PE 1 SV 1
blastp_uniprot_sprot sp|Q03834|MSH6_YEAST 301 1192 + 892 Gaps:111 74.15 1242 33.33 9e-145 DNA mismatch repair protein MSH6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN MSH6 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SMV7|MSH7_ARATH 284 1186 + 903 Gaps:113 76.83 1109 37.44 3e-143 DNA mismatch repair protein MSH7 OS Arabidopsis thaliana GN MSH7 PE 1 SV 1
blastp_uniprot_sprot sp|P52701|MSH6_HUMAN 317 1175 + 859 Gaps:43 62.35 1360 43.63 5e-105 DNA mismatch repair protein Msh6 OS Homo sapiens GN MSH6 PE 1 SV 2
blastp_uniprot_sprot sp|P54276|MSH6_MOUSE 231 1175 + 945 Gaps:59 68.92 1358 42.74 9e-105 DNA mismatch repair protein Msh6 OS Mus musculus GN Msh6 PE 1 SV 3
blastp_uniprot_sprot sp|Q9VUM0|MSH6_DROME 311 1175 + 865 Gaps:74 69.75 1190 41.20 6e-93 Probable DNA mismatch repair protein Msh6 OS Drosophila melanogaster GN Msh6 PE 1 SV 2
blastp_uniprot_sprot sp|A6RPB6|MSH3_BOTFB 353 1176 + 824 Gaps:139 77.93 1133 30.69 1e-87 DNA mismatch repair protein msh3 OS Botryotinia fuckeliana (strain B05.10) GN msh3 PE 3 SV 2
blastp_uniprot_sprot sp|P26359|MSH3_SCHPO 351 1209 + 859 Gaps:133 88.82 993 30.27 2e-85 DNA mismatch repair protein msh3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN msh3 PE 3 SV 1
blastp_uniprot_sprot sp|A7EC69|MSH3_SCLS1 347 1175 + 829 Gaps:134 78.32 1130 30.85 5e-85 DNA mismatch repair protein msh3 OS Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN msh3 PE 3 SV 1

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 473 619 147 PF05188 none MutS domain II IPR007860
SUPERFAMILY 105 146 42 SSF63748 none none none
Gene3D 337 465 129 G3DSA:3.40.1170.10 none none IPR016151
Pfam 789 880 92 PF05190 none MutS family domain IV IPR007861
PANTHER 257 1211 955 PTHR11361 none none none
SMART 980 1172 193 SM00534 none ATPase domain of DNA mismatch repair MUTS family IPR000432
SMART 691 960 270 SM00533 none DNA-binding domain of DNA mismatch repair MUTS family IPR007696
Coils 133 161 29 Coil none none none
SMART 103 161 59 SM00333 none Tudor domain IPR002999
Pfam 350 463 114 PF01624 none MutS domain I IPR007695
SUPERFAMILY 946 1175 230 SSF52540 none none IPR027417
Pfam 675 920 246 PF05192 none MutS domain III IPR007696
Gene3D 670 747 78 G3DSA:1.10.1420.10 none none none
Pfam 939 1176 238 PF00488 none MutS domain V IPR000432
SUPERFAMILY 469 538 70 SSF53150 none none IPR007860
SUPERFAMILY 608 686 79 SSF53150 none none IPR007860
Coils 867 888 22 Coil none none none
Gene3D 933 1175 243 G3DSA:3.40.50.300 none none IPR027417
PANTHER 257 1211 955 PTHR11361:SF31 none none IPR015536
Gene3D 474 538 65 G3DSA:3.30.420.110 none none IPR007860
Gene3D 570 603 34 G3DSA:3.30.420.110 none none IPR007860
SUPERFAMILY 336 459 124 SSF55271 none none IPR016151
SUPERFAMILY 674 926 253 SSF48334 none none IPR007696

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 6   Mitochondrion 2 0.019 0.893 NON-PLANT 6