Protein : Qrob_P0107140.2 Q. robur
Protein Identifier  ? Qrob_P0107140.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=1) KOG0263//KOG0266//KOG0271//KOG0272//KOG0275//KOG0281//KOG0300//KOG0316//KOG0644//KOG0646 - Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]. // WD40 repeat-containing protein [General function prediction only]. // Notchless-like WD40 repeat-containing protein [Function unknown]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // Conserved WD40 repeat-containing protein [General function prediction only]. // Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]. // WD40 repeat-containing protein [Function unknown]. // Conserved WD40 repeat-containing protein [Function unknown]. // Uncharacterized conserved protein contains WD40 repeat and BROMO domains [General function prediction only]. // WD40 repeat protein [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 610  
Kegg Orthology  K11797
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103334055 1 598 + 598 Gaps:7 35.88 1647 82.91 0.0 PH-interacting protein
blastp_kegg lcl|pper:PRUPE_ppa023042mg 1 598 + 598 Gaps:7 38.78 1524 82.74 0.0 hypothetical protein
blastp_kegg lcl|vvi:100248563 1 599 + 599 Gaps:13 33.52 1766 80.24 0.0 uncharacterized LOC100248563
blastp_kegg lcl|cit:102628602 1 598 + 598 Gaps:9 34.11 1727 81.66 0.0 bromodomain and WD repeat-containing protein 1-like
blastp_kegg lcl|cic:CICLE_v10018465mg 1 598 + 598 Gaps:9 34.11 1727 81.49 0.0 hypothetical protein
blastp_kegg lcl|fve:101300450 1 598 + 598 Gaps:7 38.13 1550 79.19 0.0 PH-interacting protein-like
blastp_kegg lcl|mdm:103432630 1 598 + 598 Gaps:7 36.24 1631 80.03 0.0 bromodomain and WD repeat-containing protein 3-like
blastp_kegg lcl|pxb:103967173 1 598 + 598 Gaps:7 35.54 1663 80.03 0.0 bromodomain and WD repeat-containing protein 1
blastp_kegg lcl|mdm:103449278 1 598 + 598 Gaps:7 35.16 1681 79.86 0.0 bromodomain and WD repeat-containing protein 3-like
blastp_kegg lcl|tcc:TCM_004804 5 598 + 594 Gaps:10 34.54 1691 79.28 0.0 WD40/YVTN repeat-like-containing domain Bromodomain isoform 1
blastp_pdb 2xl3_B 210 466 + 257 Gaps:56 93.11 334 35.37 4e-16 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl3_A 210 466 + 257 Gaps:56 93.11 334 35.37 4e-16 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_B 210 466 + 257 Gaps:56 93.11 334 35.37 4e-16 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_A 210 466 + 257 Gaps:56 93.11 334 35.37 4e-16 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2gnq_A 210 466 + 257 Gaps:56 92.56 336 35.37 4e-16 mol:protein length:336 WD-repeat protein 5
blastp_pdb 3emh_A 226 466 + 241 Gaps:56 92.77 318 35.93 1e-15 mol:protein length:318 WD repeat-containing protein 5
blastp_pdb 4a7j_A 226 466 + 241 Gaps:56 92.77 318 35.93 1e-15 mol:protein length:318 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 3ur4_B 226 466 + 241 Gaps:56 94.55 312 35.93 1e-15 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 3ur4_A 226 466 + 241 Gaps:56 94.55 312 35.93 1e-15 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 3smr_D 226 466 + 241 Gaps:56 94.55 312 35.93 1e-15 mol:protein length:312 WD repeat-containing protein 5
blastp_uniprot_sprot sp|Q8VDD9|PHIP_MOUSE 53 599 + 547 Gaps:127 25.04 1821 35.75 5e-54 PH-interacting protein OS Mus musculus GN Phip PE 1 SV 2
blastp_uniprot_sprot sp|Q8WWQ0|PHIP_HUMAN 53 599 + 547 Gaps:127 25.04 1821 35.75 8e-54 PH-interacting protein OS Homo sapiens GN PHIP PE 1 SV 2
blastp_uniprot_sprot sp|Q9NSI6|BRWD1_HUMAN 53 599 + 547 Gaps:114 19.61 2320 36.04 2e-53 Bromodomain and WD repeat-containing protein 1 OS Homo sapiens GN BRWD1 PE 1 SV 4
blastp_uniprot_sprot sp|Q921C3|BRWD1_MOUSE 53 599 + 547 Gaps:104 19.75 2304 36.04 2e-53 Bromodomain and WD repeat-containing protein 1 OS Mus musculus GN Brwd1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6RI45|BRWD3_HUMAN 53 599 + 547 Gaps:113 25.42 1802 35.81 3e-52 Bromodomain and WD repeat-containing protein 3 OS Homo sapiens GN BRWD3 PE 1 SV 2
blastp_uniprot_sprot sp|A2AHJ4|BRWD3_MOUSE 53 599 + 547 Gaps:129 25.46 1799 35.81 4e-51 Bromodomain and WD repeat-containing protein 3 OS Mus musculus GN Brwd3 PE 2 SV 1
blastp_uniprot_sprot sp|Q54MP8|Y5837_DICDI 228 365 + 138 Gaps:9 6.50 2200 42.66 3e-24 Bromodomain and WD repeat-containing DDB_G0285837 OS Dictyostelium discoideum GN DDB_G0285837 PE 4 SV 1
blastp_uniprot_sprot sp|Q8YRI1|YY46_NOSS1 241 605 + 365 Gaps:348 41.15 1526 56.53 4e-20 Uncharacterized WD repeat-containing protein alr3466 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN alr3466 PE 4 SV 1
blastp_uniprot_sprot sp|P38129|TAF5_YEAST 241 446 + 206 Gaps:16 26.82 798 27.57 3e-19 Transcription initiation factor TFIID subunit 5 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TAF5 PE 1 SV 1
blastp_uniprot_sprot sp|P49695|PKWA_THECU 241 474 + 234 Gaps:61 36.93 742 43.80 4e-19 Probable serine/threonine-protein kinase PkwA OS Thermomonospora curvata GN pkwA PE 3 SV 1

31 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 233 369 137 SSF50978 none none IPR017986
SUPERFAMILY 542 604 63 SSF50978 none none IPR017986
SUPERFAMILY 401 512 112 SSF50978 none none IPR017986
ProSitePatterns 569 583 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
Pfam 406 434 29 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 279 314 36 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 237 273 37 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 321 360 40 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 451 510 60 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 241 282 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PANTHER 492 599 108 PTHR16266 none none none
PANTHER 405 465 61 PTHR16266 none none none
ProSiteProfiles 283 324 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Gene3D 228 362 135 G3DSA:2.130.10.10 none none IPR015943
Gene3D 395 604 210 G3DSA:2.130.10.10 none none IPR015943
ProSiteProfiles 241 369 129 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
PANTHER 38 384 347 PTHR16266 none none none
ProSitePatterns 347 361 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
PRINTS 260 274 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 347 361 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 302 316 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PANTHER 492 599 108 PTHR16266:SF17 none none none
PANTHER 38 384 347 PTHR16266:SF17 none none none
SMART 446 511 66 SM00320 none WD40 repeats IPR001680
SMART 543 582 40 SM00320 none WD40 repeats IPR001680
SMART 394 434 41 SM00320 none WD40 repeats IPR001680
SMART 318 360 43 SM00320 none WD40 repeats IPR001680
SMART 276 315 40 SM00320 none WD40 repeats IPR001680
SMART 234 273 40 SM00320 none WD40 repeats IPR001680
PANTHER 405 465 61 PTHR16266:SF17 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting