Protein : Qrob_P0107060.2 Q. robur
Protein Identifier  ? Qrob_P0107060.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) PF02672 - CP12 domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 131  
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0 Synonyms

0 GO Terms

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100267103 1 130 + 130 Gaps:2 100.00 128 75.00 1e-62 calvin cycle protein CP12-like
blastp_kegg lcl|tcc:TCM_004809 1 130 + 130 Gaps:3 62.02 208 70.54 2e-56 CP12 domain-containing protein 1
blastp_kegg lcl|pop:POPTR_0014s11580g 1 130 + 130 Gaps:4 100.00 126 73.02 2e-56 POPTRDRAFT_731703 CP12 domain-containing family protein
blastp_kegg lcl|pmum:103334012 1 130 + 130 Gaps:6 78.11 169 68.94 3e-55 calvin cycle protein CP12-1 chloroplastic
blastp_kegg lcl|pop:POPTR_0002s19710g 1 130 + 130 Gaps:5 100.00 127 70.87 2e-54 POPTRDRAFT_816721 CP12 domain-containing family protein
blastp_kegg lcl|pper:PRUPE_ppa013259mg 1 130 + 130 Gaps:6 100.00 132 65.15 5e-51 hypothetical protein
blastp_kegg lcl|csv:101229133 1 130 + 130 Gaps:2 100.00 128 64.06 6e-51 calvin cycle protein CP12-2 chloroplastic-like
blastp_kegg lcl|csv:101220476 1 130 + 130 Gaps:2 100.00 128 64.06 6e-51 calvin cycle protein CP12-2 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1347170 1 130 + 130 Gaps:6 100.00 128 69.53 8e-51 hypothetical protein
blastp_kegg lcl|cmo:103494733 1 130 + 130 Gaps:2 100.00 128 60.94 8e-49 calvin cycle protein CP12-2 chloroplastic
blastp_pdb 3rvd_N 56 130 + 75 Gaps:3 95.12 82 78.21 2e-32 mol:protein length:82 Photosyntetic glyceraldehyde-3-phosphate dehy
blastp_pdb 3rvd_M 56 130 + 75 Gaps:3 95.12 82 78.21 2e-32 mol:protein length:82 Photosyntetic glyceraldehyde-3-phosphate dehy
blastp_pdb 3rvd_L 56 130 + 75 Gaps:3 95.12 82 78.21 2e-32 mol:protein length:82 Photosyntetic glyceraldehyde-3-phosphate dehy
blastp_pdb 3rvd_K 56 130 + 75 Gaps:3 95.12 82 78.21 2e-32 mol:protein length:82 Photosyntetic glyceraldehyde-3-phosphate dehy
blastp_pdb 3rvd_J 56 130 + 75 Gaps:3 95.12 82 78.21 2e-32 mol:protein length:82 Photosyntetic glyceraldehyde-3-phosphate dehy
blastp_pdb 3rvd_I 56 130 + 75 Gaps:3 95.12 82 78.21 2e-32 mol:protein length:82 Photosyntetic glyceraldehyde-3-phosphate dehy
blastp_pdb 3qv1_I 56 130 + 75 Gaps:3 95.12 82 78.21 2e-32 mol:protein length:82 CP12 protein
blastp_pdb 3qv1_H 56 130 + 75 Gaps:3 95.12 82 78.21 2e-32 mol:protein length:82 CP12 protein
blastp_pdb 3qv1_G 56 130 + 75 Gaps:3 95.12 82 78.21 2e-32 mol:protein length:82 CP12 protein
blastp_pdb 2lj9_A 56 130 + 75 Gaps:3 78.79 99 78.21 2e-32 mol:protein length:99 CP12 domain-containing protein 2
blastp_uniprot_sprot sp|Q9LZP9|CP122_ARATH 1 130 + 130 Gaps:7 100.00 131 58.78 3e-40 Calvin cycle protein CP12-2 chloroplastic OS Arabidopsis thaliana GN CP12-2 PE 1 SV 1
blastp_uniprot_sprot sp|O22914|CP121_ARATH 1 130 + 130 Gaps:10 100.00 124 59.68 9e-37 Calvin cycle protein CP12-1 chloroplastic OS Arabidopsis thaliana GN CP12-1 PE 1 SV 1
blastp_uniprot_sprot sp|A6Q0K5|CP12_CHLRE 30 130 + 101 Gaps:8 96.26 107 45.63 2e-16 Calvin cycle protein CP12 chloroplastic OS Chlamydomonas reinhardtii GN CP12 PE 1 SV 2
blastp_uniprot_sprot sp|Q9C9K2|CP123_ARATH 59 130 + 72 Gaps:2 55.22 134 50.00 7e-16 Calvin cycle protein CP12-3 chloroplastic OS Arabidopsis thaliana GN CP12-3 PE 1 SV 1
rpsblast_cdd gnl|CDD|177794 1 130 + 130 Gaps:4 100.00 126 78.57 1e-46 PLN00204 PLN00204 CP12 gene family protein Provisional.
rpsblast_cdd gnl|CDD|202342 61 130 + 70 Gaps:1 100.00 71 54.93 2e-19 pfam02672 CP12 CP12 domain. The function of this domain is unknown it does contain three conserved cysteines and a histidine that suggests this may be a zinc binding domain (Bateman A pers. observation). This domain is found associated with CBS domains in some proteins pfam00571.
rpsblast_cdd gnl|CDD|198161 61 130 + 70 Gaps:2 100.00 72 45.83 5e-14 smart01093 CP12 CP12 domain.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 61 130 70 PF02672 none CP12 domain IPR003823
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SMART 61 130 70 SM01093 none none IPR003823
Phobius 19 130 112 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 2 13 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 20 19

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting