Protein : Qrob_P0106730.2 Q. robur
Protein Identifier  ? Qrob_P0106730.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR10381:SF8 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC (PTHR10381:SF8) Code Enzyme  EC:3.4.21.92
Gene Prediction Quality  validated Protein length 

Sequence

Length: 274  
Kegg Orthology  K01358
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0004252 serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103497498 1 273 + 273 none 99.64 274 85.71 1e-168 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic
blastp_kegg lcl|pmum:103335927 1 273 + 273 Gaps:1 99.64 275 85.40 3e-168 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic
blastp_kegg lcl|gmx:100799710 1 273 + 273 Gaps:4 100.00 273 84.25 2e-161 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic-like
blastp_kegg lcl|gmx:100796744 1 273 + 273 Gaps:4 100.00 273 83.15 2e-160 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic-like
blastp_kegg lcl|csv:101213940 1 273 + 273 none 99.64 274 80.95 3e-160 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic-like
blastp_kegg lcl|mdm:103436538 4 273 + 270 Gaps:5 98.57 279 83.27 3e-159 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic
blastp_kegg lcl|tcc:TCM_007305 21 273 + 253 none 92.67 273 86.17 1e-158 CLP protease proteolytic subunit 6 isoform 1
blastp_kegg lcl|pvu:PHAVU_011G046500g 1 273 + 273 Gaps:3 100.00 274 82.48 1e-157 hypothetical protein
blastp_kegg lcl|cit:102614581 1 273 + 273 Gaps:1 100.00 272 79.78 1e-155 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0937260 1 273 + 273 Gaps:7 99.64 277 79.71 3e-154 ATP-dependent Clp protease proteolytic subunit putative (EC:3.4.21.92)
blastp_pdb 3tt6_G 98 269 + 172 none 87.76 196 47.67 9e-54 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt6_F 98 269 + 172 none 87.76 196 47.67 9e-54 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt6_E 98 269 + 172 none 87.76 196 47.67 9e-54 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt6_D 98 269 + 172 none 87.76 196 47.67 9e-54 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt6_C 98 269 + 172 none 87.76 196 47.67 9e-54 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt6_B 98 269 + 172 none 87.76 196 47.67 9e-54 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt6_A 98 269 + 172 none 87.76 196 47.67 9e-54 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt7_G 98 269 + 172 none 87.31 197 47.67 1e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt7_F 98 269 + 172 none 87.31 197 47.67 1e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt7_E 98 269 + 172 none 87.31 197 47.67 1e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_uniprot_sprot sp|Q9SAA2|CLPP6_ARATH 1 273 + 273 Gaps:8 100.00 271 76.38 3e-148 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic OS Arabidopsis thaliana GN CLPP6 PE 1 SV 1
blastp_uniprot_sprot sp|Q317Y6|CLPP4_PROM9 72 270 + 199 Gaps:7 91.32 219 47.00 1e-55 ATP-dependent Clp protease proteolytic subunit 4 OS Prochlorococcus marinus (strain MIT 9312) GN clpP4 PE 3 SV 1
blastp_uniprot_sprot sp|Q59993|CLPP2_SYNY3 86 269 + 184 Gaps:4 83.19 226 48.40 3e-55 ATP-dependent Clp protease proteolytic subunit 2 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN clpP2 PE 3 SV 1
blastp_uniprot_sprot sp|B4UAX9|CLPP_ANASK 98 269 + 172 none 84.73 203 50.58 3e-55 ATP-dependent Clp protease proteolytic subunit OS Anaeromyxobacter sp. (strain K) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|Q2IEW1|CLPP_ANADE 98 269 + 172 none 84.73 203 50.58 3e-55 ATP-dependent Clp protease proteolytic subunit OS Anaeromyxobacter dehalogenans (strain 2CP-C) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|B8J5G7|CLPP_ANAD2 98 269 + 172 none 84.73 203 50.58 3e-55 ATP-dependent Clp protease proteolytic subunit OS Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|A7HFV9|CLPP_ANADF 98 269 + 172 none 84.31 204 49.42 7e-55 ATP-dependent Clp protease proteolytic subunit OS Anaeromyxobacter sp. (strain Fw109-5) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|Q5N665|CLPP1_SYNP6 86 270 + 185 Gaps:4 95.94 197 46.03 1e-54 ATP-dependent Clp protease proteolytic subunit 1 OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN clpP1 PE 3 SV 1
blastp_uniprot_sprot sp|P54415|CLPP1_SYNE7 86 270 + 185 Gaps:4 95.94 197 46.03 1e-54 ATP-dependent Clp protease proteolytic subunit 1 OS Synechococcus elongatus (strain PCC 7942) GN clpP1 PE 3 SV 1
blastp_uniprot_sprot sp|A8MIS8|CLPP_ALKOO 98 271 + 174 none 89.23 195 48.85 2e-54 ATP-dependent Clp protease proteolytic subunit OS Alkaliphilus oremlandii (strain OhILAs) GN clpP PE 3 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 18 273 256 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 77 273 197 PTHR10381 none none IPR023562
ProSitePatterns 191 204 14 PS00382 none Endopeptidase Clp histidine active site. IPR018215
SUPERFAMILY 97 271 175 SSF52096 none none IPR029045
Phobius 1 17 17 SIGNAL_PEPTIDE none Signal peptide region none
PRINTS 98 113 16 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 190 209 20 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 169 186 18 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 247 266 20 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 138 158 21 PR00127 none Clp protease catalytic subunit P signature IPR001907
PANTHER 77 273 197 PTHR10381:SF8 none none none
Phobius 13 17 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 98 271 174 PF00574 none Clp protease IPR023562
Phobius 2 12 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 84 271 188 G3DSA:3.90.226.10 none none IPR029045

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 38   Mitochondrion 1 0.020 0.926 NON-PLANT 38