Protein : Qrob_P0104420.2 Q. robur
Protein Identifier  ? Qrob_P0104420.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=1) PTHR12894:SF10 - VAM6/VPS39 RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1044  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103945110 1 1043 + 1043 Gaps:69 100.00 1006 76.84 0.0 transforming growth factor-beta receptor-associated protein 1
blastp_kegg lcl|mdm:103446066 1 1043 + 1043 Gaps:69 100.00 1006 76.74 0.0 transforming growth factor-beta receptor-associated protein 1 homolog
blastp_kegg lcl|pmum:103325337 1 1043 + 1043 Gaps:70 100.00 1009 75.72 0.0 transforming growth factor-beta receptor-associated protein 1 homolog
blastp_kegg lcl|pper:PRUPE_ppa000766mg 1 1043 + 1043 Gaps:70 100.00 1009 75.62 0.0 hypothetical protein
blastp_kegg lcl|vvi:100251277 7 1043 + 1037 Gaps:70 99.60 1011 74.18 0.0 transforming growth factor-beta receptor-associated protein 1 homolog-like
blastp_kegg lcl|cic:CICLE_v10014143mg 5 1043 + 1039 Gaps:78 99.80 997 74.17 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_029311 7 1043 + 1037 Gaps:89 99.80 994 73.08 0.0 Transforming growth factor-beta receptor-associated protein 1 isoform 1
blastp_kegg lcl|rcu:RCOM_1349670 1 1043 + 1043 Gaps:66 100.00 1005 73.63 0.0 hypothetical protein
blastp_kegg lcl|fve:101303970 1 1043 + 1043 Gaps:94 100.00 987 74.57 0.0 transforming growth factor-beta receptor-associated protein 1-like
blastp_kegg lcl|pop:POPTR_0001s11570g 1 1043 + 1043 Gaps:85 100.00 1004 74.00 0.0 hypothetical protein
blastp_uniprot_sprot sp|A7MB11|TGFA1_BOVIN 571 1014 + 444 Gaps:50 48.20 859 28.50 2e-30 Transforming growth factor-beta receptor-associated protein 1 OS Bos taurus GN TGFBRAP1 PE 2 SV 1
blastp_uniprot_sprot sp|A4IG72|TGFA1_DANRE 571 1019 + 449 Gaps:52 48.78 863 29.69 5e-30 Transforming growth factor-beta receptor-associated protein 1 homolog OS Danio rerio GN tgfbrap1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8WUH2|TGFA1_HUMAN 571 1026 + 456 Gaps:53 49.88 860 27.04 1e-28 Transforming growth factor-beta receptor-associated protein 1 OS Homo sapiens GN TGFBRAP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q3UR70|TGFA1_MOUSE 571 1014 + 444 Gaps:51 48.26 860 25.54 8e-28 Transforming growth factor-beta receptor-associated protein 1 OS Mus musculus GN Tgfbrap1 PE 2 SV 1
blastp_uniprot_sprot sp|Q96JC1|VPS39_HUMAN 816 1014 + 199 Gaps:18 24.49 886 26.27 7e-13 Vam6/Vps39-like protein OS Homo sapiens GN VPS39 PE 1 SV 2
blastp_uniprot_sprot sp|O13955|VAM6_SCHPO 576 1017 + 442 Gaps:66 45.75 905 25.36 5e-12 Vacuolar morphogenesis protein 6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vam6 PE 3 SV 1
blastp_uniprot_sprot sp|Q8R5L3|VPS39_MOUSE 816 1014 + 199 Gaps:18 24.49 886 25.35 6e-12 Vam6/Vps39-like protein OS Mus musculus GN Vps39 PE 2 SV 1
rpsblast_cdd gnl|CDD|150957 909 1017 + 109 none 100.00 109 39.45 2e-35 pfam10367 Vps39_2 Vacuolar sorting protein 39 domain 2. This domain is found on the vacuolar sorting protein Vps39 which is a component of the C-Vps complex. Vps39 is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole. In Saccharomyces cerevisiae Vps39 has been shown to stimulate nucleotide exchange. This domain is involved in localisation and in mediating the interactions of Vps39 with Vps11.
rpsblast_kog gnl|CDD|37274 234 1029 + 796 Gaps:104 83.47 877 29.10 1e-117 KOG2063 KOG2063 KOG2063 Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|37277 816 1014 + 199 Gaps:17 22.22 846 23.94 6e-10 KOG2066 KOG2066 KOG2066 Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking secretion and vesicular transport].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 752 896 145 PF00637 none Region in Clathrin and VPS IPR000547
PANTHER 9 161 153 PTHR12894 none none none
Pfam 40 362 323 PF00780 none CNH domain IPR001180
ProSiteProfiles 722 903 182 PS50236 none Clathrin heavy-chain (CHCR) repeat profile. IPR000547
PANTHER 688 1043 356 PTHR12894 none none none
Pfam 590 711 122 PF10366 none Vacuolar sorting protein 39 domain 1 IPR019452
Pfam 909 1017 109 PF10367 none Vacuolar sorting protein 39 domain 2 IPR019453
ProSiteProfiles 29 376 348 PS50219 none Citron homology (CNH) domain profile. IPR001180
PANTHER 9 161 153 PTHR12894:SF10 none none none
PANTHER 240 671 432 PTHR12894:SF10 none none none
PANTHER 240 671 432 PTHR12894 none none none
PANTHER 688 1043 356 PTHR12894:SF10 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting