Protein : Qrob_P0103070.2 Q. robur
Protein Identifier  ? Qrob_P0103070.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR10381:SF8 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC (PTHR10381:SF8) Code Enzyme  EC:3.4.21.92
Gene Prediction Quality  validated Protein length 

Sequence

Length: 276  
Kegg Orthology  K01358
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0004252 serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103497498 10 275 + 266 Gaps:2 97.08 274 85.34 5e-162 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic
blastp_kegg lcl|pmum:103335927 3 275 + 273 Gaps:5 98.91 275 84.56 1e-159 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic
blastp_kegg lcl|gmx:100799710 1 275 + 275 Gaps:4 100.00 273 82.42 5e-157 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic-like
blastp_kegg lcl|gmx:100796744 1 275 + 275 Gaps:4 100.00 273 81.32 1e-156 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic-like
blastp_kegg lcl|tcc:TCM_007305 28 275 + 248 Gaps:2 90.84 273 87.50 5e-156 CLP protease proteolytic subunit 6 isoform 1
blastp_kegg lcl|csv:101213940 10 275 + 266 Gaps:2 97.08 274 80.83 6e-155 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic-like
blastp_kegg lcl|mdm:103436538 30 275 + 246 Gaps:3 88.53 279 87.04 6e-153 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic
blastp_kegg lcl|pvu:PHAVU_011G046500g 1 275 + 275 Gaps:3 100.00 274 80.29 5e-152 hypothetical protein
blastp_kegg lcl|pxb:103930296 6 275 + 270 Gaps:10 97.89 284 80.22 3e-150 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic-like
blastp_kegg lcl|pxb:103940986 30 275 + 246 Gaps:3 86.97 284 85.83 7e-150 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic-like
blastp_pdb 3tt7_G 100 271 + 172 none 87.31 197 47.09 2e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt7_F 100 271 + 172 none 87.31 197 47.09 2e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt7_E 100 271 + 172 none 87.31 197 47.09 2e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt7_D 100 271 + 172 none 87.31 197 47.09 2e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt7_C 100 271 + 172 none 87.31 197 47.09 2e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt7_B 100 271 + 172 none 87.31 197 47.09 2e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt7_A 100 271 + 172 none 87.31 197 47.09 2e-53 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt6_G 100 271 + 172 none 87.76 196 47.09 3e-53 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt6_F 100 271 + 172 none 87.76 196 47.09 3e-53 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3tt6_E 100 271 + 172 none 87.76 196 47.09 3e-53 mol:protein length:196 ATP-dependent Clp protease proteolytic subuni
blastp_uniprot_sprot sp|Q9SAA2|CLPP6_ARATH 1 275 + 275 Gaps:6 100.00 271 75.65 2e-145 ATP-dependent Clp protease proteolytic subunit 6 chloroplastic OS Arabidopsis thaliana GN CLPP6 PE 1 SV 1
blastp_uniprot_sprot sp|Q317Y6|CLPP4_PROM9 73 272 + 200 none 91.32 219 45.50 6e-55 ATP-dependent Clp protease proteolytic subunit 4 OS Prochlorococcus marinus (strain MIT 9312) GN clpP4 PE 3 SV 1
blastp_uniprot_sprot sp|Q5N665|CLPP1_SYNP6 88 272 + 185 Gaps:4 95.94 197 46.56 6e-55 ATP-dependent Clp protease proteolytic subunit 1 OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN clpP1 PE 3 SV 1
blastp_uniprot_sprot sp|P54415|CLPP1_SYNE7 88 272 + 185 Gaps:4 95.94 197 46.56 6e-55 ATP-dependent Clp protease proteolytic subunit 1 OS Synechococcus elongatus (strain PCC 7942) GN clpP1 PE 3 SV 1
blastp_uniprot_sprot sp|B4UAX9|CLPP_ANASK 100 271 + 172 none 84.73 203 50.00 8e-55 ATP-dependent Clp protease proteolytic subunit OS Anaeromyxobacter sp. (strain K) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|Q59993|CLPP2_SYNY3 88 271 + 184 Gaps:4 83.19 226 47.87 8e-55 ATP-dependent Clp protease proteolytic subunit 2 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN clpP2 PE 3 SV 1
blastp_uniprot_sprot sp|Q2IEW1|CLPP_ANADE 100 271 + 172 none 84.73 203 50.00 9e-55 ATP-dependent Clp protease proteolytic subunit OS Anaeromyxobacter dehalogenans (strain 2CP-C) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|B8J5G7|CLPP_ANAD2 100 271 + 172 none 84.73 203 50.00 9e-55 ATP-dependent Clp protease proteolytic subunit OS Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|A7HFV9|CLPP_ANADF 100 271 + 172 none 84.31 204 48.84 2e-54 ATP-dependent Clp protease proteolytic subunit OS Anaeromyxobacter sp. (strain Fw109-5) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|A8MIS8|CLPP_ALKOO 100 273 + 174 none 89.23 195 48.28 5e-54 ATP-dependent Clp protease proteolytic subunit OS Alkaliphilus oremlandii (strain OhILAs) GN clpP PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 99 273 175 SSF52096 none none IPR029045
Gene3D 86 273 188 G3DSA:3.90.226.10 none none IPR029045
PANTHER 78 275 198 PTHR10381:SF8 none none none
Pfam 100 273 174 PF00574 none Clp protease IPR023562
ProSitePatterns 193 206 14 PS00382 none Endopeptidase Clp histidine active site. IPR018215
PRINTS 140 160 21 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 171 188 18 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 249 268 20 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 192 211 20 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 100 115 16 PR00127 none Clp protease catalytic subunit P signature IPR001907
PANTHER 78 275 198 PTHR10381 none none IPR023562

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Mitochondrion 2 0.013 0.876 NON-PLANT 26