Protein : Qrob_P0102740.2 Q. robur
Protein Identifier  ? Qrob_P0102740.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=16) 3.2.1.67 - Galacturan 1,4-alpha-galacturonidase. Code Enzyme  EC:3.2.1.67
Gene Prediction Quality  validated Protein length 

Sequence

Length: 394  
Kegg Orthology  K01213
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103442964 3 389 + 387 Gaps:4 97.75 400 58.57 7e-163 exopolygalacturonase-like
blastp_kegg lcl|pxb:103955042 3 389 + 387 Gaps:4 97.75 400 58.57 9e-163 exopolygalacturonase-like
blastp_kegg lcl|cmo:103498752 24 391 + 368 Gaps:6 85.51 428 62.84 8e-162 exopolygalacturonase-like
blastp_kegg lcl|tcc:TCM_002289 1 390 + 390 Gaps:9 98.02 405 56.68 7e-160 Polygalacturonase
blastp_kegg lcl|pxb:103927064 1 389 + 389 Gaps:6 99.00 399 58.23 2e-158 exopolygalacturonase-like
blastp_kegg lcl|mdm:103442965 10 380 + 371 Gaps:4 93.75 400 58.93 3e-158 exopolygalacturonase-like
blastp_kegg lcl|mdm:103412274 1 389 + 389 Gaps:6 99.00 399 58.23 7e-158 exopolygalacturonase-like
blastp_kegg lcl|pmum:103329197 17 389 + 373 Gaps:4 94.49 399 58.89 9e-158 exopolygalacturonase-like
blastp_kegg lcl|mdm:103453494 1 389 + 389 Gaps:6 99.00 399 57.97 4e-157 exopolygalacturonase-like
blastp_kegg lcl|pmum:103343818 9 389 + 381 Gaps:5 96.02 402 58.03 5e-157 exopolygalacturonase clone GBGA483-like
blastp_pdb 2iq7_G 187 382 + 196 Gaps:12 55.46 339 34.57 3e-17 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 187 382 + 196 Gaps:12 55.46 339 34.57 3e-17 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 187 382 + 196 Gaps:12 55.46 339 34.57 3e-17 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_D 187 382 + 196 Gaps:12 55.46 339 34.57 3e-17 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_C 187 382 + 196 Gaps:12 55.46 339 34.57 3e-17 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_B 187 382 + 196 Gaps:12 55.46 339 34.57 3e-17 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_A 187 382 + 196 Gaps:12 55.46 339 34.57 3e-17 mol:protein length:339 endopolygalacturonase
blastp_pdb 1bhe_A 60 360 + 301 Gaps:49 83.51 376 29.94 7e-17 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1nhc_F 110 381 + 272 Gaps:37 78.87 336 29.43 8e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 110 381 + 272 Gaps:37 78.87 336 29.43 8e-17 mol:protein length:336 Polygalacturonase I
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 24 386 + 363 Gaps:3 96.55 377 57.14 2e-150 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 1 390 + 390 Gaps:10 97.30 407 51.26 2e-142 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 1 390 + 390 Gaps:10 97.30 407 51.26 8e-142 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 12 390 + 379 Gaps:7 95.45 396 52.65 4e-141 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 37 390 + 354 Gaps:3 98.07 362 55.49 7e-140 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|P35337|PGLR_BRANA 1 389 + 389 Gaps:7 97.23 397 50.26 2e-134 Polygalacturonase OS Brassica napus PE 2 SV 1
blastp_uniprot_sprot sp|Q40312|PGLR_MEDSA 10 389 + 380 Gaps:13 90.97 421 50.91 2e-128 Polygalacturonase OS Medicago sativa PE 2 SV 1
blastp_uniprot_sprot sp|P49063|PGLR2_ARATH 16 390 + 375 Gaps:2 84.91 444 47.75 4e-122 Exopolygalacturonase clone GBGA483 OS Arabidopsis thaliana GN At3g07850 PE 2 SV 2
blastp_uniprot_sprot sp|P35339|PGLR3_MAIZE 25 382 + 358 Gaps:4 88.29 410 44.75 3e-109 Exopolygalacturonase OS Zea mays GN PG2C PE 2 SV 1
blastp_uniprot_sprot sp|P26216|PGLR1_MAIZE 25 389 + 365 Gaps:4 90.00 410 44.44 3e-109 Exopolygalacturonase OS Zea mays GN PG1 PE 1 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 7 17 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 55 377 323 PF00295 none Glycosyl hydrolases family 28 IPR000743
Phobius 18 21 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 7 391 385 PTHR31375 none none none
PANTHER 7 391 385 PTHR31375:SF2 none none none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
SMART 200 221 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 253 274 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 173 199 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 283 304 22 SM00710 none Parallel beta-helix repeats IPR006626
Gene3D 11 390 380 G3DSA:2.160.20.10 none none IPR012334
Phobius 22 393 372 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 12 390 379 SSF51126 none none IPR011050

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 23 22
SignalP_EUK 1 21 20
SignalP_GRAM_NEGATIVE 1 23 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 1 0.961 0.022 NON-PLANT 21