6 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0008270 | zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
| GO:0003676 | nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
| GO:0005634 | nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| GO:0007049 | cell cycle | The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. |
| GO:0006974 | cellular response to DNA damage stimulus | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. |
| GO:0048478 | replication fork protection | Any process that prevents the collapse of stalled replication forks. |
10 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|cmo:103496437 | 3 | 140 | + | 138 | Gaps:58 | 63.60 | 283 | 51.67 | 4e-47 | TIMELESS-interacting protein |
| blastp_kegg | lcl|csv:101231936 | 3 | 125 | + | 123 | Gaps:49 | 54.93 | 284 | 54.49 | 3e-42 | TIMELESS-interacting protein-like |
| blastp_kegg | lcl|csv:101222555 | 3 | 125 | + | 123 | Gaps:49 | 55.71 | 280 | 54.49 | 4e-42 | TIMELESS-interacting protein-like |
| blastp_kegg | lcl|vvi:100240999 | 1 | 138 | + | 138 | Gaps:43 | 62.20 | 291 | 50.83 | 1e-41 | TIMELESS-interacting protein-like |
| blastp_kegg | lcl|rcu:RCOM_0814320 | 1 | 136 | + | 136 | Gaps:45 | 65.54 | 267 | 48.57 | 8e-40 | nucleic acid binding protein putative |
| blastp_kegg | lcl|mtr:MTR_4g075130 | 9 | 132 | + | 124 | Gaps:48 | 58.74 | 286 | 49.40 | 4e-39 | TIMELESS-interacting protein |
| blastp_kegg | lcl|cit:102621455 | 1 | 136 | + | 136 | Gaps:54 | 62.16 | 296 | 47.83 | 5e-39 | TIMELESS-interacting protein-like |
| blastp_kegg | lcl|cic:CICLE_v10005530mg | 1 | 136 | + | 136 | Gaps:49 | 75.20 | 246 | 44.86 | 5e-39 | hypothetical protein |
| blastp_kegg | lcl|cam:101496991 | 4 | 137 | + | 134 | Gaps:58 | 60.07 | 283 | 50.00 | 7e-39 | chromosome segregation in meiosis protein 3-like |
| blastp_kegg | lcl|gmx:100808422 | 5 | 138 | + | 134 | Gaps:52 | 54.72 | 318 | 48.28 | 1e-38 | TIMELESS-interacting protein-like |
6 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 28 | 22 | SSF57756 | none | none | IPR001878 |
| SMART | 10 | 26 | 17 | SM00343 | none | zinc finger | IPR001878 |
| ProSiteProfiles | 11 | 26 | 16 | PS50158 | none | Zinc finger CCHC-type profile. | IPR001878 |
| Gene3D | 9 | 26 | 18 | G3DSA:4.10.60.10 | none | none | IPR001878 |
| Pfam | 10 | 26 | 17 | PF00098 | none | Zinc knuckle | IPR001878 |
| ProDom | 53 | 106 | 54 | PD089639 | none | CCHC-TYPE RIKEN EMBRYO CDNA FINGER ENRICHED ZINC WHOLE FULL-LENGTH LIBRARY | IPR012923 |
5 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran_2000_2002_QTL6_Delta.F | Qrob_Chr03 | 3 | s_2HYXJ2_207 | s_1AUAXK_317 | 29.12 | 6,3 | 45,37 | lod | 3.1666 | 0.026 |
| Bourran2_2014_nLBD_3P | Qrob_Chr03 | 3 | s_1ET7H8_604 | s_1BYNB5_834 | 23,73 | 0 | 46,72 | lod | 1,7573 | 3,8 |
| PM_1999_QTL14_peak_Bud_burst_3P | Qrob_Chr03 | 3 | s_2F0SI1_756 | v_6056_735 | 11,78 | 3,78 | 50,78 | lod | 2,5 | 4,5 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran2_2014_rEpiBC*_3P | Qrob_Chr03 | 3 | s_1A3B3X_1163 | s_1DKGMO_450 | 23,04 | 4,92 | 41,12 | lod | 2,5668 | 7 |
