Protein : Qrob_P0101770.2 Q. robur
Protein Identifier  ? Qrob_P0101770.2 Organism . Name  Quercus robur
Score  75.2 Score Type  egn
Protein Description  (M=2) PTHR19241//PTHR19241:SF176 - ATP-BINDING CASSETTE TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1079  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103332345 1 1078 + 1078 Gaps:47 100.00 1119 75.60 0.0 ABC transporter G family member 24-like
blastp_kegg lcl|pxb:103958377 13 1078 + 1066 Gaps:47 99.19 1110 73.48 0.0 ABC transporter G family member 24-like
blastp_kegg lcl|rcu:RCOM_0481380 1 1078 + 1078 Gaps:44 100.00 1116 72.40 0.0 Protein white putative (EC:3.6.3.44)
blastp_kegg lcl|pop:POPTR_0010s23210g 1 1078 + 1078 Gaps:44 99.73 1119 73.12 0.0 POPTRDRAFT_228054 ABC transporter family protein
blastp_kegg lcl|gmx:100775464 5 1078 + 1074 Gaps:49 99.64 1115 71.83 0.0 ABC transporter G family member 24-like
blastp_kegg lcl|gmx:100798807 14 1078 + 1065 Gaps:49 98.75 1116 72.14 0.0 ABC transporter G family member 24-like
blastp_kegg lcl|cic:CICLE_v10030565mg 1 1078 + 1078 Gaps:43 99.91 1118 71.17 0.0 hypothetical protein
blastp_kegg lcl|cit:102629884 1 1078 + 1078 Gaps:43 99.91 1118 71.17 0.0 ABC transporter G family member 28-like
blastp_kegg lcl|mdm:103428712 10 1078 + 1069 Gaps:44 99.46 1113 73.62 0.0 ABC transporter G family member 24-like
blastp_kegg lcl|fve:101292356 31 1078 + 1048 Gaps:44 92.43 1175 73.57 0.0 ABC transporter G family member 24-like
blastp_pdb 1oxv_D 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_pdb 1oxv_B 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_pdb 1oxv_A 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_pdb 1oxu_C 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_pdb 1oxu_B 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_pdb 1oxu_A 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_pdb 1oxt_D 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_pdb 1oxt_B 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_pdb 1oxt_A 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_pdb 1oxs_C 467 695 + 229 Gaps:20 63.74 353 33.78 3e-16 mol:protein length:353 ABC transporter ATP binding protein
blastp_uniprot_sprot sp|Q9MAG3|AB24G_ARATH 10 1078 + 1069 Gaps:66 97.48 1109 64.01 0.0 ABC transporter G family member 24 OS Arabidopsis thaliana GN ABCG24 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FF46|AB28G_ARATH 24 1078 + 1055 Gaps:45 98.29 1109 62.20 0.0 ABC transporter G family member 28 OS Arabidopsis thaliana GN ABCG28 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SJK6|WBC30_ARATH 22 1078 + 1057 Gaps:75 98.15 1082 60.45 0.0 Putative white-brown complex homolog protein 30 OS Arabidopsis thaliana GN WBC30 PE 3 SV 3
blastp_uniprot_sprot sp|Q7TMS5|ABCG2_MOUSE 470 726 + 257 Gaps:12 40.03 657 42.59 4e-56 ATP-binding cassette sub-family G member 2 OS Mus musculus GN Abcg2 PE 2 SV 1
blastp_uniprot_sprot sp|Q5MB13|ABCG2_MACMU 480 978 + 499 Gaps:42 72.32 654 31.29 2e-54 ATP-binding cassette sub-family G member 2 OS Macaca mulatta GN ABCG2 PE 2 SV 1
blastp_uniprot_sprot sp|Q80W57|ABCG2_RAT 469 726 + 258 Gaps:3 38.81 657 42.35 4e-54 ATP-binding cassette sub-family G member 2 OS Rattus norvegicus GN Abcg2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8MIB3|ABCG2_PIG 470 726 + 257 Gaps:13 40.24 656 41.29 6e-54 ATP-binding cassette sub-family G member 2 OS Sus scrofa GN ABCG2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UNQ0|ABCG2_HUMAN 480 980 + 501 Gaps:41 72.67 655 31.30 9e-54 ATP-binding cassette sub-family G member 2 OS Homo sapiens GN ABCG2 PE 1 SV 3
blastp_uniprot_sprot sp|Q7XA72|AB21G_ARATH 465 991 + 527 Gaps:66 77.23 672 31.60 1e-53 ABC transporter G family member 21 OS Arabidopsis thaliana GN ABCG21 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C6W5|AB14G_ARATH 480 727 + 248 Gaps:3 37.81 648 43.27 1e-53 ABC transporter G family member 14 OS Arabidopsis thaliana GN ABCG14 PE 2 SV 1

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 867 877 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 954 975 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 470 711 242 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 1076 1078 3 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 496 688 193 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Phobius 1 30 30 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 31 846 816 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 470 700 231 G3DSA:3.40.50.300 none none IPR027417
Phobius 26 30 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 816 1078 263 PTHR19241 none none none
PANTHER 168 233 66 PTHR19241 none none none
PANTHER 466 777 312 PTHR19241 none none none
Phobius 1049 1075 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 878 897 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 982 998 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 847 866 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 816 1078 263 PTHR19241:SF176 none none none
PANTHER 168 233 66 PTHR19241:SF176 none none none
PANTHER 466 777 312 PTHR19241:SF176 none none none
Phobius 999 1048 50 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 898 953 56 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 13 13 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 489 639 151 PF00005 none ABC transporter IPR003439
Gene3D 178 268 91 G3DSA:2.10.50.10 none none none
Phobius 976 981 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 14 25 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 469 693 225 SSF52540 none none IPR027417
ProSitePatterns 611 625 15 PS00211 none ABC transporters family signature. IPR017871

6 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 35 34
SignalP_GRAM_NEGATIVE 1 30 29
TMHMM 847 869 22
TMHMM 953 975 22
TMHMM 1047 1069 22
SignalP_EUK 1 30 29

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 30   Secretory pathway 1 0.931 0.058 NON-PLANT 30