Protein : Qrob_P0101640.2 Q. robur
Protein Identifier  ? Qrob_P0101640.2 Organism . Name  Quercus robur
Score  98.1 Score Type  egn
Protein Description  (M=1) KOG1299//KOG1300//KOG1302 - Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking secretion and vesicular transport]. // Vesicle trafficking protein Sec1 [Intracellular trafficking secretion and vesicular transport]. // Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 569  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0006904 vesicle docking involved in exocytosis The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103332334 1 566 + 566 Gaps:58 100.00 594 82.49 0.0 vacuolar protein-sorting-associated protein 33 homolog
blastp_kegg lcl|pper:PRUPE_ppa003188mg 1 566 + 566 Gaps:58 100.00 594 82.15 0.0 hypothetical protein
blastp_kegg lcl|vvi:100242749 1 568 + 568 Gaps:59 100.00 597 81.91 0.0 vacuolar protein sorting-associated protein 33 homolog
blastp_kegg lcl|pxb:103958390 1 564 + 564 Gaps:59 99.66 595 79.76 0.0 vacuolar protein-sorting-associated protein 33 homolog
blastp_kegg lcl|csv:101230408 1 568 + 568 Gaps:58 100.00 596 78.69 0.0 vacuolar protein sorting-associated protein 33 homolog
blastp_kegg lcl|mdm:103428441 1 564 + 564 Gaps:59 99.66 595 79.26 0.0 vacuolar protein-sorting-associated protein 33 homolog
blastp_kegg lcl|sot:102599355 1 568 + 568 Gaps:59 100.00 597 77.55 0.0 vacuolar protein sorting-associated protein 33 homolog
blastp_kegg lcl|rcu:RCOM_1538620 1 568 + 568 Gaps:59 100.00 597 77.72 0.0 vacuolar protein sorting putative
blastp_kegg lcl|sly:101263813 1 568 + 568 Gaps:58 100.00 596 77.68 0.0 vacuolar protein sorting-associated protein 33 homolog
blastp_kegg lcl|tcc:TCM_043266 1 568 + 568 Gaps:58 100.00 596 78.86 0.0 Sec1/munc18-like (SM) proteins superfamily isoform 1
blastp_uniprot_sprot sp|Q94KJ7|VPS33_ARATH 1 568 + 568 Gaps:60 100.00 592 70.10 0.0 Vacuolar protein sorting-associated protein 33 homolog OS Arabidopsis thaliana GN VPS33 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D2N9|VP33A_MOUSE 47 566 + 520 Gaps:61 87.46 598 39.77 9e-111 Vacuolar protein sorting-associated protein 33A OS Mus musculus GN Vps33a PE 1 SV 2
blastp_uniprot_sprot sp|Q63615|VP33A_RAT 47 566 + 520 Gaps:60 87.44 597 39.46 6e-110 Vacuolar protein sorting-associated protein 33A OS Rattus norvegicus GN Vps33a PE 1 SV 1
blastp_uniprot_sprot sp|Q96AX1|VP33A_HUMAN 47 566 + 520 Gaps:55 87.42 596 38.39 2e-107 Vacuolar protein sorting-associated protein 33A OS Homo sapiens GN VPS33A PE 1 SV 1
blastp_uniprot_sprot sp|Q58EN8|VP33B_DANRE 26 566 + 541 Gaps:88 90.92 617 32.62 1e-74 Vacuolar protein sorting-associated protein 33B OS Danio rerio GN vps33b PE 2 SV 1
blastp_uniprot_sprot sp|Q2HJ18|VP33B_BOVIN 26 565 + 540 Gaps:92 90.76 617 32.86 6e-71 Vacuolar protein sorting-associated protein 33B OS Bos taurus GN VPS33B PE 2 SV 1
blastp_uniprot_sprot sp|P59016|VP33B_MOUSE 26 565 + 540 Gaps:92 90.76 617 32.68 7e-70 Vacuolar protein sorting-associated protein 33B OS Mus musculus GN Vps33b PE 1 SV 1
blastp_uniprot_sprot sp|Q63616|VP33B_RAT 51 565 + 515 Gaps:92 86.71 617 32.52 7e-69 Vacuolar protein sorting-associated protein 33B OS Rattus norvegicus GN Vps33b PE 2 SV 1
blastp_uniprot_sprot sp|Q9H267|VP33B_HUMAN 26 565 + 540 Gaps:92 90.76 617 32.14 1e-68 Vacuolar protein sorting-associated protein 33B OS Homo sapiens GN VPS33B PE 1 SV 2
blastp_uniprot_sprot sp|Q9Y1I2|VP33A_DROME 37 564 + 528 Gaps:82 89.79 617 31.23 3e-67 Vacuolar protein sorting-associated protein 33A OS Drosophila melanogaster GN car PE 1 SV 1
rpsblast_cdd gnl|CDD|201542 21 563 + 543 Gaps:87 96.75 554 26.87 2e-78 pfam00995 Sec1 Sec1 family.
rpsblast_cdd gnl|CDD|34759 50 568 + 519 Gaps:69 87.97 582 22.85 2e-32 COG5158 SEC1 Proteins involved in synaptic transmission and general secretion Sec1 family [Intracellular trafficking and secretion].
rpsblast_kog gnl|CDD|36516 1 563 + 563 Gaps:94 99.83 600 39.57 1e-132 KOG1302 KOG1302 KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|36513 20 363 + 344 Gaps:54 63.39 549 20.11 1e-11 KOG1299 KOG1299 KOG1299 Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|36514 80 555 + 476 Gaps:87 80.78 593 20.04 5e-08 KOG1300 KOG1300 KOG1300 Vesicle trafficking protein Sec1 [Intracellular trafficking secretion and vesicular transport].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 19 564 546 SSF56815 none none IPR001619
PANTHER 31 568 538 PTHR11679 none none IPR001619
Phobius 537 568 32 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 516 536 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 515 515 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 47 561 515 PF00995 none Sec1 family IPR001619
PANTHER 31 568 538 PTHR11679:SF1 none none IPR027121
Gene3D 202 309 108 G3DSA:3.90.830.10 none none none
Gene3D 449 562 114 G3DSA:3.40.50.1910 none none IPR027482
Gene3D 119 201 83 G3DSA:3.40.50.1910 none none IPR027482

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting