Protein : Qrob_P0098340.2 Q. robur
Protein Identifier  ? Qrob_P0098340.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=9) K18999 - RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] Code Enzyme  EC:3.1.3.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 359  
Kegg Orthology  K18999
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0004721 phosphoprotein phosphatase activity Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101265041 7 348 + 342 Gaps:21 76.48 472 43.49 8e-89 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|sly:101264737 7 348 + 342 Gaps:21 70.51 512 43.49 3e-88 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|cmo:103498688 7 352 + 346 Gaps:21 80.75 452 42.74 8e-88 RNA polymerase II C-terminal domain phosphatase-like 4
blastp_kegg lcl|csv:101207983 7 352 + 346 Gaps:22 80.53 452 42.58 3e-87 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|sot:102591519 7 348 + 342 Gaps:21 75.52 478 42.94 7e-87 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|ath:AT5G58003 7 355 + 349 Gaps:22 83.86 440 42.01 5e-86 CPL4 C-terminal domain phosphatase-like 4
blastp_kegg lcl|tcc:TCM_039510 7 354 + 348 Gaps:22 78.04 469 42.08 3e-85 RNA polymerase II ctd phosphatase putative isoform 1
blastp_kegg lcl|rcu:RCOM_1628950 6 352 + 347 Gaps:22 76.36 478 42.19 1e-84 RNA polymerase II ctd phosphatase putative (EC:3.1.3.16)
blastp_kegg lcl|crb:CARUB_v10026559mg 7 354 + 348 Gaps:21 92.88 393 41.64 4e-84 hypothetical protein
blastp_kegg lcl|sbi:SORBI_10g025580 5 356 + 352 Gaps:21 66.85 558 40.48 5e-84 SORBIDRAFT_10g025580 Sb10g025580 hypothetical protein
blastp_pdb 3ef0_A 45 346 + 302 Gaps:73 98.12 372 27.12 8e-27 mol:protein length:372 RNA polymerase II subunit A C-terminal domain
blastp_pdb 3ef1_A 31 346 + 316 Gaps:27 70.59 442 29.81 7e-17 mol:protein length:442 RNA polymerase II subunit A C-terminal domain
blastp_pdb 1ta0_A 55 198 + 144 Gaps:19 69.54 197 30.66 1e-09 mol:protein length:197 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 3pgl_B 55 198 + 144 Gaps:19 76.11 180 30.66 2e-09 mol:protein length:180 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 3pgl_A 55 198 + 144 Gaps:19 76.11 180 30.66 2e-09 mol:protein length:180 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 1t9z_A 55 198 + 144 Gaps:19 69.54 197 29.93 3e-09 mol:protein length:197 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 2q5e_H 55 198 + 144 Gaps:23 73.26 187 27.01 5e-09 mol:protein length:187 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 2q5e_G 55 198 + 144 Gaps:23 73.26 187 27.01 5e-09 mol:protein length:187 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 2q5e_F 55 198 + 144 Gaps:23 73.26 187 27.01 5e-09 mol:protein length:187 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 2q5e_E 55 198 + 144 Gaps:23 73.26 187 27.01 5e-09 mol:protein length:187 Carboxy-terminal domain RNA polymerase II pol
blastp_uniprot_sprot sp|Q00IB6|CPL4_ARATH 7 355 + 349 Gaps:22 83.86 440 42.01 2e-87 RNA polymerase II C-terminal domain phosphatase-like 4 OS Arabidopsis thaliana GN CPL4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LL04|CPL3_ARATH 43 348 + 306 Gaps:25 26.19 1241 34.77 6e-44 RNA polymerase II C-terminal domain phosphatase-like 3 OS Arabidopsis thaliana GN CPL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q7TSG2|CTDP1_MOUSE 5 211 + 207 Gaps:30 23.23 960 27.80 5e-22 RNA polymerase II subunit A C-terminal domain phosphatase OS Mus musculus GN Ctdp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y5B0|CTDP1_HUMAN 5 206 + 202 Gaps:30 22.68 961 27.98 5e-22 RNA polymerase II subunit A C-terminal domain phosphatase OS Homo sapiens GN CTDP1 PE 1 SV 3
blastp_uniprot_sprot sp|Q03254|FCP1_YEAST 5 208 + 204 Gaps:38 32.79 732 30.00 2e-18 RNA polymerase II subunit A C-terminal domain phosphatase OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN FCP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8SV03|FCP1_ENCCU 7 206 + 200 Gaps:22 47.69 411 30.61 1e-17 RNA polymerase II subunit A C-terminal domain phosphatase OS Encephalitozoon cuniculi (strain GB-M1) GN FCP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P376|FCP1_SCHPO 5 346 + 342 Gaps:44 49.10 723 28.45 2e-17 RNA polymerase II subunit A C-terminal domain phosphatase OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN fcp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9GZU7|CTDS1_HUMAN 55 198 + 144 Gaps:19 52.49 261 30.66 3e-09 Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS Homo sapiens GN CTDSP1 PE 1 SV 1
blastp_uniprot_sprot sp|P58466|CTDS1_MOUSE 55 198 + 144 Gaps:19 52.49 261 30.66 4e-09 Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS Mus musculus GN Ctdsp1 PE 1 SV 1
blastp_uniprot_sprot sp|O14595|CTDS2_HUMAN 55 198 + 144 Gaps:23 50.55 271 27.01 4e-08 Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 OS Homo sapiens GN CTDSP2 PE 1 SV 2

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 46 210 165 G3DSA:3.40.50.1000 none none IPR023214
PANTHER 7 349 343 PTHR23081 none none none
ProSiteProfiles 256 348 93 PS50172 none BRCT domain profile. IPR001357
SMART 54 204 151 SM00577 none catalytic domain of ctd-like phosphatases IPR004274
SUPERFAMILY 258 348 91 SSF52113 none none IPR001357
TIGRFAM 50 200 151 TIGR02250 none FCP1_euk: FCP1-like phosphatase, phosphatase domain IPR011947
Pfam 57 202 146 PF03031 none NLI interacting factor-like phosphatase IPR004274
Pfam 259 334 76 PF00533 none BRCA1 C Terminus (BRCT) domain IPR001357
Gene3D 259 349 91 G3DSA:3.40.50.10190 none none IPR001357
ProSiteProfiles 51 218 168 PS50969 none FCP1 homology domain profile. IPR004274
SUPERFAMILY 49 202 154 SSF56784 none none IPR023214

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting