Protein : Qrob_P0098330.2 Q. robur
Protein Identifier  ? Qrob_P0098330.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=9) K18999 - RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] Code Enzyme  EC:3.1.3.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 391  
Kegg Orthology  K18999
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0004721 phosphoprotein phosphatase activity Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101207983 35 385 + 351 Gaps:24 79.87 452 43.21 6e-81 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|cmo:103498688 35 385 + 351 Gaps:25 80.09 452 43.09 2e-79 RNA polymerase II C-terminal domain phosphatase-like 4
blastp_kegg lcl|sly:101264737 27 370 + 344 Gaps:28 70.31 512 41.39 3e-78 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|sly:101265041 35 370 + 336 Gaps:23 73.52 472 42.07 5e-78 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|sot:102591519 27 370 + 344 Gaps:28 75.31 478 41.39 5e-77 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|mdm:103443068 28 385 + 358 Gaps:27 83.86 440 42.01 1e-76 RNA polymerase II C-terminal domain phosphatase-like 4
blastp_kegg lcl|fve:101311893 35 384 + 350 Gaps:24 77.59 464 43.06 2e-75 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|tcc:TCM_039510 35 384 + 350 Gaps:24 76.76 469 41.39 2e-74 RNA polymerase II ctd phosphatase putative isoform 1
blastp_kegg lcl|pper:PRUPE_ppa005647mg 8 384 + 377 Gaps:27 85.52 449 40.10 9e-74 hypothetical protein
blastp_kegg lcl|sita:101786822 33 390 + 358 Gaps:26 68.51 543 40.05 1e-73 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_pdb 3ef0_A 72 384 + 313 Gaps:61 99.46 372 25.95 8e-19 mol:protein length:372 RNA polymerase II subunit A C-terminal domain
blastp_pdb 3ef1_A 65 233 + 169 Gaps:11 40.27 442 31.46 6e-17 mol:protein length:442 RNA polymerase II subunit A C-terminal domain
blastp_pdb 1ta0_A 81 230 + 150 Gaps:15 72.59 197 30.77 2e-06 mol:protein length:197 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 3pgl_B 81 230 + 150 Gaps:15 79.44 180 30.77 2e-06 mol:protein length:180 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 3pgl_A 81 230 + 150 Gaps:15 79.44 180 30.77 2e-06 mol:protein length:180 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 1t9z_A 81 230 + 150 Gaps:13 72.59 197 28.67 3e-06 mol:protein length:197 Carboxy-terminal domain RNA polymerase II pol
blastp_pdb 2hhl_D 83 230 + 148 Gaps:13 72.31 195 29.08 4e-06 mol:protein length:195 CTD small phosphatase-like protein
blastp_pdb 2hhl_C 83 230 + 148 Gaps:13 72.31 195 29.08 4e-06 mol:protein length:195 CTD small phosphatase-like protein
blastp_pdb 2hhl_B 83 230 + 148 Gaps:13 72.31 195 29.08 4e-06 mol:protein length:195 CTD small phosphatase-like protein
blastp_pdb 2hhl_A 83 230 + 148 Gaps:13 72.31 195 29.08 4e-06 mol:protein length:195 CTD small phosphatase-like protein
blastp_uniprot_sprot sp|Q00IB6|CPL4_ARATH 35 370 + 336 Gaps:30 79.09 440 41.95 3e-69 RNA polymerase II C-terminal domain phosphatase-like 4 OS Arabidopsis thaliana GN CPL4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LL04|CPL3_ARATH 71 386 + 316 Gaps:31 26.83 1241 32.43 4e-35 RNA polymerase II C-terminal domain phosphatase-like 3 OS Arabidopsis thaliana GN CPL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q7TSG2|CTDP1_MOUSE 33 238 + 206 Gaps:27 22.60 960 31.80 2e-20 RNA polymerase II subunit A C-terminal domain phosphatase OS Mus musculus GN Ctdp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y5B0|CTDP1_HUMAN 33 245 + 213 Gaps:29 23.31 961 31.25 2e-20 RNA polymerase II subunit A C-terminal domain phosphatase OS Homo sapiens GN CTDP1 PE 1 SV 3
blastp_uniprot_sprot sp|Q03254|FCP1_YEAST 35 233 + 199 Gaps:37 31.42 732 29.57 2e-18 RNA polymerase II subunit A C-terminal domain phosphatase OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN FCP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P376|FCP1_SCHPO 33 233 + 201 Gaps:23 30.71 723 28.83 3e-18 RNA polymerase II subunit A C-terminal domain phosphatase OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN fcp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8SV03|FCP1_ENCCU 67 234 + 168 Gaps:15 38.20 411 35.67 2e-15 RNA polymerase II subunit A C-terminal domain phosphatase OS Encephalitozoon cuniculi (strain GB-M1) GN FCP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5YDB6|CPL1_ARATH 134 227 + 94 Gaps:19 10.86 967 34.29 6e-07 RNA polymerase II C-terminal domain phosphatase-like 1 OS Arabidopsis thaliana GN CPL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9GZU7|CTDS1_HUMAN 45 238 + 194 Gaps:20 72.03 261 28.72 8e-07 Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS Homo sapiens GN CTDSP1 PE 1 SV 1
blastp_uniprot_sprot sp|O95476|CNEP1_HUMAN 78 271 + 194 Gaps:19 79.10 244 30.57 2e-06 CTD nuclear envelope phosphatase 1 OS Homo sapiens GN CTDNEP1 PE 1 SV 2

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 87 237 151 SM00577 none catalytic domain of ctd-like phosphatases IPR004274
ProSiteProfiles 291 384 94 PS50172 none BRCT domain profile. IPR001357
Pfam 90 244 155 PF03031 none NLI interacting factor-like phosphatase IPR004274
SUPERFAMILY 82 238 157 SSF56784 none none IPR023214
TIGRFAM 83 233 151 TIGR02250 none FCP1_euk: FCP1-like phosphatase, phosphatase domain IPR011947
SUPERFAMILY 287 386 100 SSF52113 none none IPR001357
Gene3D 79 239 161 G3DSA:3.40.50.1000 none none IPR023214
Gene3D 294 386 93 G3DSA:3.40.50.10190 none none IPR001357
PANTHER 28 385 358 PTHR23081 none none none
ProSiteProfiles 84 251 168 PS50969 none FCP1 homology domain profile. IPR004274
Pfam 294 370 77 PF00533 none BRCA1 C Terminus (BRCT) domain IPR001357

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting