Protein : Qrob_P0098320.2 Q. robur
Protein Identifier  ? Qrob_P0098320.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=9) K18999 - RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] Code Enzyme  EC:3.1.3.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 382  
Kegg Orthology  K18999
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0004721 phosphoprotein phosphatase activity Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101207983 26 378 + 353 Gaps:25 80.53 452 42.31 1e-80 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|sly:101265041 28 363 + 336 Gaps:24 73.73 472 42.82 7e-80 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|sly:101264737 28 363 + 336 Gaps:24 67.97 512 42.82 2e-79 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|cmo:103498688 26 377 + 352 Gaps:26 80.53 452 42.31 4e-79 RNA polymerase II C-terminal domain phosphatase-like 4
blastp_kegg lcl|sot:102591519 28 363 + 336 Gaps:24 72.80 478 42.82 4e-78 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|pmum:103341256 22 378 + 357 Gaps:30 83.07 449 42.63 7e-78 RNA polymerase II C-terminal domain phosphatase-like 4
blastp_kegg lcl|pper:PRUPE_ppa005647mg 22 362 + 341 Gaps:30 79.51 449 44.26 9e-78 hypothetical protein
blastp_kegg lcl|mdm:103443068 26 378 + 353 Gaps:27 82.73 440 42.31 1e-77 RNA polymerase II C-terminal domain phosphatase-like 4
blastp_kegg lcl|rcu:RCOM_1628950 24 380 + 357 Gaps:28 77.20 478 40.92 2e-76 RNA polymerase II ctd phosphatase putative (EC:3.1.3.16)
blastp_kegg lcl|tcc:TCM_039510 29 362 + 334 Gaps:25 73.56 469 43.77 7e-76 RNA polymerase II ctd phosphatase putative isoform 1
blastp_pdb 3ef0_A 66 377 + 312 Gaps:64 99.46 372 25.95 1e-21 mol:protein length:372 RNA polymerase II subunit A C-terminal domain
blastp_pdb 3ef1_A 68 226 + 159 Gaps:14 38.24 442 31.36 2e-14 mol:protein length:442 RNA polymerase II subunit A C-terminal domain
blastp_uniprot_sprot sp|Q00IB6|CPL4_ARATH 24 363 + 340 Gaps:31 80.23 440 41.64 2e-69 RNA polymerase II C-terminal domain phosphatase-like 4 OS Arabidopsis thaliana GN CPL4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LL04|CPL3_ARATH 66 379 + 314 Gaps:29 26.51 1241 33.43 2e-36 RNA polymerase II C-terminal domain phosphatase-like 3 OS Arabidopsis thaliana GN CPL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q9Y5B0|CTDP1_HUMAN 29 238 + 210 Gaps:30 23.10 961 31.08 2e-22 RNA polymerase II subunit A C-terminal domain phosphatase OS Homo sapiens GN CTDP1 PE 1 SV 3
blastp_uniprot_sprot sp|Q7TSG2|CTDP1_MOUSE 29 234 + 206 Gaps:30 22.71 960 31.19 7e-22 RNA polymerase II subunit A C-terminal domain phosphatase OS Mus musculus GN Ctdp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q03254|FCP1_YEAST 26 226 + 201 Gaps:36 31.83 732 30.04 2e-15 RNA polymerase II subunit A C-terminal domain phosphatase OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN FCP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8SV03|FCP1_ENCCU 29 227 + 199 Gaps:21 46.72 411 32.81 6e-15 RNA polymerase II subunit A C-terminal domain phosphatase OS Encephalitozoon cuniculi (strain GB-M1) GN FCP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P376|FCP1_SCHPO 29 226 + 198 Gaps:26 30.43 723 26.36 2e-14 RNA polymerase II subunit A C-terminal domain phosphatase OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN fcp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8JIL9|CNEP1_XENLA 72 265 + 194 Gaps:19 78.28 244 29.84 1e-06 CTD nuclear envelope phosphatase 1 OS Xenopus laevis GN ctdnep1 PE 1 SV 1
blastp_uniprot_sprot sp|Q28HW9|CNEP1_XENTR 72 265 + 194 Gaps:19 78.28 244 29.84 1e-06 CTD nuclear envelope phosphatase 1 OS Xenopus tropicalis GN ctdnep1 PE 2 SV 1
blastp_uniprot_sprot sp|O95476|CNEP1_HUMAN 69 265 + 197 Gaps:19 79.51 244 27.84 5e-06 CTD nuclear envelope phosphatase 1 OS Homo sapiens GN CTDNEP1 PE 1 SV 2
rpsblast_cdd gnl|CDD|131304 74 226 + 153 Gaps:13 100.00 156 44.87 4e-41 TIGR02250 FCP1_euk FCP1-like phosphatase phosphatase domain. This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1 ) and closely related phosphatases from eukaryotes including plants fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases and together both are detected by the Pfam model pfam03031.
rpsblast_cdd gnl|CDD|197796 78 229 + 152 Gaps:13 99.32 148 36.05 1e-30 smart00577 CPDc catalytic domain of ctd-like phosphatases.
rpsblast_cdd gnl|CDD|202514 81 238 + 158 Gaps:19 90.85 153 29.50 2e-20 pfam03031 NIF NLI interacting factor-like phosphatase. This family contains a number of NLI interacting factor isoforms and also an N-terminal regions of RNA polymerase II CTC phosphatase and FCP1 serine phosphatase. This region has been identified as the minimal phosphatase domain.
rpsblast_cdd gnl|CDD|162785 79 229 + 151 Gaps:17 88.89 162 29.86 2e-16 TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This model represents the putative phosphatase domain of a family of eukaryotic proteins including "Dullard" and the NLI interacting factor (NIF)-like phosphatases. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDNxPxxa) and aparrently lacking the last aspartate. This domain is classified as a "Class III" HAD since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3. This domain is related to domains found in FCP1-like phosphatases (TIGR02250) and together both are detected by the Pfam model pfam03031.
rpsblast_kog gnl|CDD|35544 29 226 + 198 Gaps:26 33.07 635 39.05 3e-31 KOG0323 KOG0323 KOG0323 TFIIF-interacting CTD phosphatases including NLI-interacting factor [Transcription].
rpsblast_kog gnl|CDD|36818 67 231 + 165 Gaps:18 59.92 262 25.48 5e-12 KOG1605 KOG1605 KOG1605 TFIIF-interacting CTD phosphatase including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 78 230 153 SM00577 none catalytic domain of ctd-like phosphatases IPR004274
SUPERFAMILY 73 231 159 SSF56784 none none IPR023214
ProSiteProfiles 284 377 94 PS50172 none BRCT domain profile. IPR001357
SUPERFAMILY 288 378 91 SSF52113 none none IPR001357
Pfam 287 363 77 PF00533 none BRCA1 C Terminus (BRCT) domain IPR001357
Gene3D 287 379 93 G3DSA:3.40.50.10190 none none IPR001357
ProSiteProfiles 75 244 170 PS50969 none FCP1 homology domain profile. IPR004274
Gene3D 69 232 164 G3DSA:3.40.50.1000 none none IPR023214
TIGRFAM 74 226 153 TIGR02250 none FCP1_euk: FCP1-like phosphatase, phosphatase domain IPR011947
PANTHER 22 378 357 PTHR23081 none none none
Pfam 81 234 154 PF03031 none NLI interacting factor-like phosphatase IPR004274

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting