Protein : Qrob_P0098290.2 Q. robur
Protein Identifier  ? Qrob_P0098290.2 Organism . Name  Quercus robur
Score  78.8 Score Type  egn
Protein Description  (M=9) K18999 - RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] Code Enzyme  EC:3.1.3.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 410  
Kegg Orthology  K18999
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0004721 phosphoprotein phosphatase activity Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100785033 1 407 + 407 Gaps:55 100.00 442 41.86 4e-98 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|tcc:TCM_039510 71 407 + 337 Gaps:33 78.04 469 45.36 4e-96 RNA polymerase II ctd phosphatase putative isoform 1
blastp_kegg lcl|gmx:100800381 1 407 + 407 Gaps:45 99.55 442 40.68 1e-95 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|cam:101512019 1 403 + 403 Gaps:56 98.00 450 40.59 3e-95 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|mdm:103443068 67 403 + 337 Gaps:33 83.18 440 44.81 3e-94 RNA polymerase II C-terminal domain phosphatase-like 4
blastp_kegg lcl|pvu:PHAVU_005G040600g 1 407 + 407 Gaps:52 100.00 443 40.86 4e-94 hypothetical protein
blastp_kegg lcl|cmo:103498688 1 407 + 407 Gaps:46 98.45 452 40.00 8e-93 RNA polymerase II C-terminal domain phosphatase-like 4
blastp_kegg lcl|sbi:SORBI_10g025580 71 407 + 337 Gaps:32 66.13 558 41.46 2e-92 SORBIDRAFT_10g025580 Sb10g025580 hypothetical protein
blastp_kegg lcl|csv:101207983 73 407 + 335 Gaps:33 80.53 452 43.41 2e-92 RNA polymerase II C-terminal domain phosphatase-like 4-like
blastp_kegg lcl|brp:103856720 72 407 + 336 Gaps:33 78.09 470 44.41 4e-92 RNA polymerase II C-terminal domain phosphatase-like 4
blastp_pdb 3ef0_A 107 401 + 295 Gaps:91 98.39 372 25.96 6e-23 mol:protein length:372 RNA polymerase II subunit A C-terminal domain
blastp_pdb 3ef1_A 106 269 + 164 Gaps:18 40.27 442 35.96 8e-21 mol:protein length:442 RNA polymerase II subunit A C-terminal domain
blastp_uniprot_sprot sp|Q00IB6|CPL4_ARATH 24 407 + 384 Gaps:38 94.55 440 40.62 2e-92 RNA polymerase II C-terminal domain phosphatase-like 4 OS Arabidopsis thaliana GN CPL4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LL04|CPL3_ARATH 115 404 + 290 Gaps:51 26.51 1241 32.83 1e-39 RNA polymerase II C-terminal domain phosphatase-like 3 OS Arabidopsis thaliana GN CPL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q03254|FCP1_YEAST 72 269 + 198 Gaps:37 31.56 732 31.60 2e-23 RNA polymerase II subunit A C-terminal domain phosphatase OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN FCP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8SV03|FCP1_ENCCU 73 276 + 204 Gaps:8 48.18 411 31.82 8e-23 RNA polymerase II subunit A C-terminal domain phosphatase OS Encephalitozoon cuniculi (strain GB-M1) GN FCP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P376|FCP1_SCHPO 71 269 + 199 Gaps:27 30.71 723 32.43 1e-22 RNA polymerase II subunit A C-terminal domain phosphatase OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN fcp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y5B0|CTDP1_HUMAN 73 269 + 197 Gaps:21 21.85 961 32.38 3e-22 RNA polymerase II subunit A C-terminal domain phosphatase OS Homo sapiens GN CTDP1 PE 1 SV 3
blastp_uniprot_sprot sp|Q7TSG2|CTDP1_MOUSE 73 269 + 197 Gaps:21 21.88 960 32.86 4e-22 RNA polymerase II subunit A C-terminal domain phosphatase OS Mus musculus GN Ctdp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q54GB2|CTSL2_DICDI 129 212 + 84 Gaps:3 14.29 567 37.04 4e-06 CTD small phosphatase-like protein 2 OS Dictyostelium discoideum GN ctdspl2 PE 3 SV 1
blastp_uniprot_sprot sp|Q05D32|CTSL2_HUMAN 132 211 + 80 Gaps:3 16.52 466 38.96 1e-05 CTD small phosphatase-like protein 2 OS Homo sapiens GN CTDSPL2 PE 1 SV 2
rpsblast_cdd gnl|CDD|131304 125 269 + 145 Gaps:10 99.36 156 45.81 3e-45 TIGR02250 FCP1_euk FCP1-like phosphatase phosphatase domain. This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1 ) and closely related phosphatases from eukaryotes including plants fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases and together both are detected by the Pfam model pfam03031.
rpsblast_cdd gnl|CDD|197796 128 272 + 145 Gaps:4 99.32 148 34.69 2e-32 smart00577 CPDc catalytic domain of ctd-like phosphatases.
rpsblast_cdd gnl|CDD|202514 130 266 + 137 Gaps:10 83.01 153 29.92 2e-20 pfam03031 NIF NLI interacting factor-like phosphatase. This family contains a number of NLI interacting factor isoforms and also an N-terminal regions of RNA polymerase II CTC phosphatase and FCP1 serine phosphatase. This region has been identified as the minimal phosphatase domain.
rpsblast_cdd gnl|CDD|34789 128 278 + 151 Gaps:11 41.54 390 34.57 1e-10 COG5190 FCP1 TFIIF-interacting CTD phosphatases including NLI-interacting factor [Transcription].
rpsblast_cdd gnl|CDD|162785 129 268 + 140 Gaps:18 86.42 162 27.14 2e-09 TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This model represents the putative phosphatase domain of a family of eukaryotic proteins including "Dullard" and the NLI interacting factor (NIF)-like phosphatases. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDNxPxxa) and aparrently lacking the last aspartate. This domain is classified as a "Class III" HAD since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3. This domain is related to domains found in FCP1-like phosphatases (TIGR02250) and together both are detected by the Pfam model pfam03031.
rpsblast_kog gnl|CDD|35544 72 269 + 198 Gaps:19 33.23 635 42.65 1e-39 KOG0323 KOG0323 KOG0323 TFIIF-interacting CTD phosphatases including NLI-interacting factor [Transcription].
rpsblast_kog gnl|CDD|36818 27 292 + 266 Gaps:30 93.13 262 21.31 3e-07 KOG1605 KOG1605 KOG1605 TFIIF-interacting CTD phosphatase including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 126 269 144 TIGR02250 none FCP1_euk: FCP1-like phosphatase, phosphatase domain IPR011947
PANTHER 71 403 333 PTHR23081 none none none
SUPERFAMILY 123 272 150 SSF56784 none none IPR023214
Gene3D 327 404 78 G3DSA:3.40.50.10190 none none IPR001357
ProSiteProfiles 319 403 85 PS50172 none BRCT domain profile. IPR001357
Pfam 131 276 146 PF03031 none NLI interacting factor-like phosphatase IPR004274
SUPERFAMILY 200 212 13 SSF52113 none none IPR001357
SUPERFAMILY 323 404 82 SSF52113 none none IPR001357
Gene3D 120 292 173 G3DSA:3.40.50.1000 none none IPR023214
ProSiteProfiles 125 291 167 PS50969 none FCP1 homology domain profile. IPR004274
SMART 128 273 146 SM00577 none catalytic domain of ctd-like phosphatases IPR004274

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting