Protein : Qrob_P0097490.2 Q. robur
Protein Identifier  ? Qrob_P0097490.2 Organism . Name  Quercus robur
Score  23.2 Score Type  egn
Protein Description  (M=4) K03141 - transcription initiation factor TFIIH subunit 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 378  
Kegg Orthology  K03141
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006289 nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0000439 core TFIIH complex The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003591mg 17 362 + 346 Gaps:60 59.68 563 64.58 5e-124 hypothetical protein
blastp_kegg lcl|cmo:103497008 17 362 + 346 Gaps:62 56.47 595 65.18 2e-123 probable RNA polymerase II transcription factor B subunit 1-1
blastp_kegg lcl|vvi:100249755 15 362 + 348 Gaps:66 57.14 602 64.24 3e-123 probable RNA polymerase II transcription factor B subunit 1-1-like
blastp_kegg lcl|pmum:103318967 17 362 + 346 Gaps:60 58.13 578 63.99 3e-122 probable RNA polymerase II transcription factor B subunit 1-1
blastp_kegg lcl|pxb:103933400 17 362 + 346 Gaps:58 55.45 606 62.20 6e-120 probable RNA polymerase II transcription factor B subunit 1-1
blastp_kegg lcl|pxb:103946393 17 362 + 346 Gaps:62 56.00 600 61.61 2e-117 probable RNA polymerase II transcription factor B subunit 1-3
blastp_kegg lcl|mdm:103441983 17 362 + 346 Gaps:62 53.67 626 61.61 7e-115 probable RNA polymerase II transcription factor B subunit 1-3
blastp_kegg lcl|csv:101224181 19 354 + 336 Gaps:62 58.95 553 63.80 4e-114 probable RNA polymerase II transcription factor B subunit 1-3-like
blastp_kegg lcl|cam:101509283 17 366 + 350 Gaps:65 58.53 586 60.35 2e-111 probable RNA polymerase II transcription factor B subunit 1-1-like
blastp_kegg lcl|rcu:RCOM_0267720 18 362 + 345 Gaps:66 57.45 597 59.48 4e-108 TFIIH basal transcription factor complex subunit putative
blastp_uniprot_sprot sp|Q9M322|TFB1C_ARATH 15 358 + 344 Gaps:64 57.69 579 52.40 9e-88 Probable RNA polymerase II transcription factor B subunit 1-3 OS Arabidopsis thaliana GN TFB1-3 PE 2 SV 2
blastp_uniprot_sprot sp|Q3ECP0|TFB1A_ARATH 15 363 + 349 Gaps:64 57.36 591 51.03 2e-86 Probable RNA polymerase II transcription factor B subunit 1-1 OS Arabidopsis thaliana GN TFB1-1 PE 2 SV 1
rpsblast_kog gnl|CDD|37285 9 368 + 360 Gaps:89 58.94 548 23.84 5e-24 KOG2074 KOG2074 KOG2074 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit TFB1 [Transcription Replication recombination and repair].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 271 358 88 PTHR12856 none none IPR027079
PANTHER 18 244 227 PTHR12856 none none IPR027079
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 22 377 356 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 17 21 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 4 16 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_EUK 1 21 20

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 1 0.917 0.093 NON-PLANT 21