Protein : Qrob_P0094160.2 Q. robur

Protein Identifier  ? Qrob_P0094160.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=36) 2.4.1.207 - Xyloglucan:xyloglucosyl transferase. Code Enzyme  EC:2.4.1.207
Gene Prediction Quality  validated Protein length 

Sequence

Length: 299  
Kegg Orthology  K08235

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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0010411 xyloglucan metabolic process The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
GO:0006073 cellular glucan metabolic process The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
GO:0016762 xyloglucan:xyloglucosyl transferase activity Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan.
GO:0048046 apoplast The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
GO:0042546 cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_014650 8 298 + 291 Gaps:12 98.59 283 56.99 2e-116 Xyloglucan endotransglucosylase/hydrolase 2 putative
blastp_kegg lcl|cit:102631028 12 281 + 270 Gaps:10 92.20 282 58.08 1e-113 putative xyloglucan endotransglucosylase/hydrolase protein 1-like
blastp_kegg lcl|cic:CICLE_v10033360mg 38 281 + 244 Gaps:4 89.22 269 60.42 5e-112 hypothetical protein
blastp_kegg lcl|ath:AT4G13090 3 298 + 296 Gaps:21 97.60 292 57.54 2e-106 XTH2 xyloglucan endotransglucosylase/hydrolase 2
blastp_kegg lcl|aly:ARALYDRAFT_359039 11 297 + 287 Gaps:12 97.60 292 56.49 3e-106 hypothetical protein
blastp_kegg lcl|gmx:100819550 26 294 + 269 Gaps:8 94.06 286 56.51 2e-105 xyloglucan endotransglucosylase/hydrolase protein 2-like
blastp_kegg lcl|vvi:100855249 38 296 + 259 Gaps:10 91.07 280 61.18 3e-105 putative xyloglucan endotransglucosylase/hydrolase protein 1-like
blastp_kegg lcl|pvu:PHAVU_008G129900g 38 294 + 257 Gaps:7 90.46 283 58.59 4e-105 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1719370 1 294 + 294 Gaps:19 99.30 285 56.18 9e-105 Xyloglucan endotransglucosylase/hydrolase protein 2 precursor putative (EC:2.4.1.207)
blastp_kegg lcl|aly:ARALYDRAFT_683060 6 297 + 292 Gaps:10 98.65 296 54.45 2e-103 hypothetical protein
blastp_pdb 1un1_B 30 298 + 269 Gaps:8 96.76 278 47.58 4e-86 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1un1_A 30 298 + 269 Gaps:8 96.76 278 47.58 4e-86 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_B 30 298 + 269 Gaps:8 96.76 278 47.58 4e-86 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_A 30 298 + 269 Gaps:8 96.76 278 47.58 4e-86 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 2vh9_B 5 294 + 290 Gaps:32 98.62 290 39.86 4e-58 mol:protein length:290 CELLULASE
blastp_pdb 2vh9_A 5 294 + 290 Gaps:32 98.62 290 39.86 4e-58 mol:protein length:290 CELLULASE
blastp_pdb 2uwb_B 39 294 + 256 Gaps:18 92.88 267 41.13 1e-56 mol:protein length:267 CELLULASE
blastp_pdb 2uwb_A 39 294 + 256 Gaps:18 92.88 267 41.13 1e-56 mol:protein length:267 CELLULASE
blastp_pdb 2uwc_B 39 294 + 256 Gaps:23 93.36 271 41.11 2e-55 mol:protein length:271 CELLULASE
blastp_pdb 2uwc_A 39 294 + 256 Gaps:23 93.36 271 41.11 2e-55 mol:protein length:271 CELLULASE
blastp_uniprot_sprot sp|Q9SV60|XTH2_ARATH 3 298 + 296 Gaps:21 97.60 292 57.54 6e-108 Xyloglucan endotransglucosylase/hydrolase protein 2 OS Arabidopsis thaliana GN XTH2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SV61|XTH1_ARATH 6 297 + 292 Gaps:11 99.66 292 53.61 1e-102 Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS Arabidopsis thaliana GN XTH1 PE 3 SV 2
blastp_uniprot_sprot sp|Q9LJR7|XTH3_ARATH 6 294 + 289 Gaps:12 99.66 290 51.21 2e-97 Xyloglucan endotransglucosylase/hydrolase protein 3 OS Arabidopsis thaliana GN XTH3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XIW1|XTH5_ARATH 6 298 + 293 Gaps:13 98.29 293 45.49 7e-83 Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS Arabidopsis thaliana GN XTH5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LNZ5|XTHB_PHAAN 15 298 + 284 Gaps:8 96.93 293 45.07 8e-83 Probable xyloglucan endotransglucosylase/hydrolase protein B OS Phaseolus angularis GN XTHB PE 2 SV 1
blastp_uniprot_sprot sp|Q41638|XTHA_PHAAN 10 298 + 289 Gaps:10 98.29 292 45.30 5e-82 Xyloglucan endotransglucosylase/hydrolase protein A OS Phaseolus angularis GN XTHA PE 1 SV 1
blastp_uniprot_sprot sp|Q6YDN9|XTH_BRAOB 15 298 + 284 Gaps:8 96.27 295 44.01 7e-82 Xyloglucan endotransglucosylase/hydrolase OS Brassica oleracea var. botrytis GN XET16A PE 1 SV 1
blastp_uniprot_sprot sp|Q39099|XTH4_ARATH 7 298 + 292 Gaps:14 96.62 296 44.41 8e-81 Xyloglucan endotransglucosylase/hydrolase protein 4 OS Arabidopsis thaliana GN XTH4 PE 1 SV 1
blastp_uniprot_sprot sp|P93349|XTH_TOBAC 32 298 + 267 Gaps:10 91.19 295 45.72 5e-80 Probable xyloglucan endotransglucosylase/hydrolase protein OS Nicotiana tabacum GN XTH PE 2 SV 1
blastp_uniprot_sprot sp|Q41542|XTH_WHEAT 28 298 + 271 Gaps:8 92.49 293 45.02 5e-80 Probable xyloglucan endotransglucosylase/hydrolase OS Triticum aestivum GN XTH PE 2 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 23 298 276 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 33 297 265 G3DSA:2.60.120.200 none none IPR013320
Pfam 39 219 181 PF00722 none Glycosyl hydrolases family 16 IPR000757
PANTHER 39 298 260 PTHR31062 none none none
Phobius 4 17 14 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 36 297 262 SSF49899 none none IPR013320
Phobius 18 22 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PRINTS 132 145 14 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PRINTS 170 187 18 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PRINTS 71 89 19 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PRINTS 150 167 18 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
Pfam 245 294 50 PF06955 none Xyloglucan endo-transglycosylase (XET) C-terminus IPR010713
PIRSF 3 298 296 PIRSF005604 none none IPR016455
PANTHER 39 298 260 PTHR31062:SF19 none none none
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 22 21
SignalP_EUK 1 22 21
SignalP_GRAM_NEGATIVE 1 22 21

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 22   Secretory pathway 2 0.897 0.205 NON-PLANT 22