Protein : Qrob_P0093650.2 Q. robur
Protein Identifier  ? Qrob_P0093650.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) K03232 - elongation factor EF-1 beta subunit Gene Prediction Quality  validated
Protein length 

Sequence

Length: 191  
Kegg Orthology  K03232
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003746 translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
GO:0006414 translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
GO:0005853 eukaryotic translation elongation factor 1 complex A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa010923mg 1 175 + 175 Gaps:11 71.30 230 84.15 4e-74 hypothetical protein
blastp_kegg lcl|pxb:103954891 1 177 + 177 Gaps:9 71.79 234 83.93 1e-71 elongation factor 1-delta-like
blastp_kegg lcl|mdm:103413381 1 177 + 177 Gaps:9 71.79 234 83.93 1e-71 elongation factor 1-delta-like
blastp_kegg lcl|pmum:103327198 1 175 + 175 Gaps:10 71.43 231 83.03 1e-68 elongation factor 1-delta 2-like
blastp_kegg lcl|pmum:103322483 1 175 + 175 Gaps:10 71.43 231 83.03 1e-68 elongation factor 1-delta 2-like
blastp_kegg lcl|pper:PRUPE_ppa010902mg 1 175 + 175 Gaps:10 71.43 231 83.03 1e-68 hypothetical protein
blastp_kegg lcl|fve:101314310 1 175 + 175 Gaps:9 71.55 232 84.94 2e-68 elongation factor 1-delta-like
blastp_kegg lcl|cic:CICLE_v10027451mg 1 175 + 175 Gaps:11 71.30 230 73.78 3e-68 hypothetical protein
blastp_kegg lcl|cam:101496460 1 175 + 175 Gaps:8 71.67 233 79.04 3e-68 elongation factor 1-delta 2-like
blastp_kegg lcl|pxb:103945839 1 175 + 175 Gaps:10 71.43 231 82.42 8e-68 elongation factor 1-delta-like
blastp_pdb 1b64_A 85 175 + 91 Gaps:3 96.70 91 62.50 5e-28 mol:protein length:91 ELONGATION FACTOR 1-BETA
blastp_pdb 1g7c_B 82 175 + 94 Gaps:3 96.81 94 43.96 2e-18 mol:protein length:94 ELONGATION FACTOR 1-BETA
blastp_pdb 1f60_B 82 175 + 94 Gaps:3 96.81 94 43.96 2e-18 mol:protein length:94 ELONGATION FACTOR EEF1BA
blastp_pdb 1ijf_B 84 175 + 92 Gaps:3 98.89 90 43.82 5e-18 mol:protein length:90 elongation factor 1-beta
blastp_pdb 1ije_B 84 175 + 92 Gaps:3 98.89 90 43.82 5e-18 mol:protein length:90 elongation factor 1-beta
blastp_pdb 2b7c_B 82 175 + 94 Gaps:3 96.81 94 42.86 9e-18 mol:protein length:94 elongation factor-1 beta
blastp_pdb 2b7b_B 82 175 + 94 Gaps:3 96.81 94 42.86 9e-18 mol:protein length:94 elongation factor-1 beta
blastp_uniprot_sprot sp|P93447|EF1D_PIMBR 1 175 + 175 Gaps:15 70.80 226 82.50 1e-76 Elongation factor 1-delta OS Pimpinella brachycarpa PE 2 SV 3
blastp_uniprot_sprot sp|Q9SI20|EF1D2_ARATH 1 175 + 175 Gaps:9 71.86 231 79.52 4e-69 Elongation factor 1-delta 2 OS Arabidopsis thaliana GN At2g18110 PE 2 SV 1
blastp_uniprot_sprot sp|P48006|EF1D1_ARATH 1 175 + 175 Gaps:9 71.86 231 73.49 1e-64 Elongation factor 1-delta 1 OS Arabidopsis thaliana GN At1g30230 PE 2 SV 2
blastp_uniprot_sprot sp|Q84WM9|EF1B1_ARATH 56 175 + 120 none 52.63 228 80.00 3e-55 Elongation factor 1-beta 1 OS Arabidopsis thaliana GN At5g12110 PE 2 SV 2
blastp_uniprot_sprot sp|Q40682|EF1D2_ORYSJ 3 175 + 173 Gaps:15 69.91 226 77.22 4e-53 Elongation factor 1-delta 2 OS Oryza sativa subsp. japonica GN Os03g0406200 PE 1 SV 3
blastp_uniprot_sprot sp|P29545|EF1B_ORYSJ 56 175 + 120 Gaps:1 53.12 224 80.67 4e-53 Elongation factor 1-beta OS Oryza sativa subsp. japonica GN Os07g0662500 PE 1 SV 3
blastp_uniprot_sprot sp|Q40680|EF1D1_ORYSJ 54 175 + 122 none 53.28 229 86.07 2e-51 Elongation factor 1-delta 1 OS Oryza sativa subsp. japonica GN Os07g0614500 PE 2 SV 3
blastp_uniprot_sprot sp|O81918|EF1D_BETVU 1 175 + 175 Gaps:12 71.43 231 72.12 3e-50 Elongation factor 1-delta OS Beta vulgaris PE 2 SV 3
blastp_uniprot_sprot sp|Q9SCX3|EF1B2_ARATH 54 175 + 122 none 54.46 224 79.51 2e-48 Elongation factor 1-beta 2 OS Arabidopsis thaliana GN At5g19510 PE 1 SV 1
blastp_uniprot_sprot sp|P29546|EF1B_WHEAT 80 175 + 96 Gaps:2 43.52 216 80.85 9e-44 Elongation factor 1-beta OS Triticum aestivum PE 1 SV 2
rpsblast_cdd gnl|CDD|29372 85 175 + 91 Gaps:4 98.86 88 45.98 2e-18 cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein EF1A for GTP an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B which is the alpha subunit in yeast is responsible for the catalysis of this exchange reaction..
rpsblast_cdd gnl|CDD|201421 87 175 + 89 Gaps:6 100.00 87 52.87 2e-18 pfam00736 EF1_GNE EF-1 guanine nucleotide exchange domain. This family is the guanine nucleotide exchange domain of EF-1 beta and EF-1 delta chains.
rpsblast_cdd gnl|CDD|197956 87 175 + 89 Gaps:6 98.86 88 40.23 6e-17 smart00888 EF1_GNE EF-1 guanine nucleotide exchange domain. Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria and can consist of three subunits: EF1B-alpha (or EF-1beta) EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta). This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta also known as EF1B-alpha) and delta (EF-1delta also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity which mainly resides in their homologous guanine nucleotide exchange domains found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma).

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 80 175 96 G3DSA:3.30.70.60 none none IPR014717
Pfam 87 175 89 PF00736 "Reactome:REACT_17015","Reactome:REACT_71" EF-1 guanine nucleotide exchange domain IPR014038
SMART 86 175 90 SM00888 "Reactome:REACT_17015","Reactome:REACT_71" EF-1 guanine nucleotide exchange domain IPR014038
Coils 58 79 22 Coil none none none
PANTHER 43 175 133 PTHR11595 none none none
SUPERFAMILY 83 175 93 SSF54984 "Reactome:REACT_17015","Reactome:REACT_71" none IPR014038
PANTHER 43 175 133 PTHR11595:SF24 none none none
ProSitePatterns 50 58 9 PS00824 "Reactome:REACT_17015","Reactome:REACT_71" Elongation factor 1 beta/beta'/delta chain signature 1. IPR001326

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting