Protein : Qrob_P0093570.2 Q. robur
Protein Identifier  ? Qrob_P0093570.2 Organism . Name  Quercus robur
Score  82.0 Score Type  egn
Protein Description  (M=2) PTHR23092:SF19 - PUTATIVE UNCHARACTERIZED PROTEIN Code Enzyme  EC:2.7.7.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 273  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016779 nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_042278 53 234 + 182 none 21.77 836 79.12 5e-96 NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein putative isoform 1
blastp_kegg lcl|pop:POPTR_0013s15100g 55 234 + 180 none 26.43 681 80.56 5e-95 POPTRDRAFT_1097644 hypothetical protein
blastp_kegg lcl|pop:POPTR_0019s14930g 52 228 + 177 none 21.91 808 79.66 3e-94 hypothetical protein
blastp_kegg lcl|gmx:100814626 51 228 + 178 none 22.82 780 79.21 5e-91 uncharacterized LOC100814626
blastp_kegg lcl|gmx:100816328 51 228 + 178 none 22.85 779 78.65 2e-90 uncharacterized LOC100816328
blastp_kegg lcl|pmum:103340921 52 234 + 183 none 27.64 662 74.32 2e-88 uncharacterized LOC103340921
blastp_kegg lcl|vvi:100258499 32 234 + 203 Gaps:19 25.11 884 65.77 2e-87 uncharacterized LOC100258499
blastp_kegg lcl|mdm:103434029 52 234 + 183 none 20.33 900 75.96 2e-87 uncharacterized LOC103434029
blastp_kegg lcl|pper:PRUPE_ppa001915mg 52 234 + 183 none 24.66 742 74.86 2e-86 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10011044mg 52 234 + 183 none 20.75 882 75.41 3e-86 hypothetical protein
rpsblast_cdd gnl|CDD|143392 55 160 + 106 Gaps:13 92.11 114 31.43 6e-11 cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha mouse testis-specific cytoplasmic PAP beta human nuclear PAP gamma Saccharomyces cerevisiae PAP1 TRF4 and-5 Schizosaccharomyces pombe caffeine-induced death proteins -1 and -14 Caenorhabditis elegans Germ Line Development-2 and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1 and Trypanosoma brucei 3'-TUTase-1 -2 and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily two carboxylates Dx[D/E] together with a third more distal carboxylate coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family these carboxylate residues are conserved.
rpsblast_cdd gnl|CDD|34857 56 233 + 178 Gaps:15 37.14 482 23.46 5e-09 COG5260 TRF4 DNA polymerase sigma [DNA replication recombination and repair].
rpsblast_kog gnl|CDD|37117 9 234 + 226 Gaps:33 48.44 514 29.32 4e-40 KOG1906 KOG1906 KOG1906 DNA polymerase sigma [Replication recombination and repair].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 56 228 173 PTHR23092:SF19 none none none
Phobius 11 23 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 64 122 59 PF01909 none Nucleotidyltransferase domain IPR002934
Coils 231 252 22 Coil none none none
Gene3D 53 180 128 G3DSA:3.30.460.10 none none none
Phobius 24 29 6 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 29 29 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 30 272 243 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 56 228 173 PTHR23092 none none none
SUPERFAMILY 53 196 144 SSF81301 none none none

2 Localization

Analysis Start End Length
SignalP_EUK 1 29 28
TMHMM 7 29 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 29   Secretory pathway 1 0.940 0.052 NON-PLANT 29