Protein : Qrob_P0093410.2 Q. robur
Protein Identifier  ? Qrob_P0093410.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) K03145 - transcription elongation factor S-II Gene Prediction Quality  validated
Protein length 

Sequence

Length: 223  
Kegg Orthology  K03145
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0006357 regulation of transcription from RNA polymerase II promoter Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0032784 regulation of DNA-templated transcription, elongation Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s10980g 53 221 + 169 Gaps:5 48.30 352 61.18 3e-65 POPTRDRAFT_560996 transcription factor S-II domain-containing family protein
blastp_kegg lcl|pop:POPTR_0016s14510g 53 221 + 169 Gaps:5 50.15 339 61.18 1e-64 POPTRDRAFT_825420 hypothetical protein
blastp_kegg lcl|tcc:TCM_019685 53 221 + 169 Gaps:5 46.32 367 61.18 3e-64 Transcript elongation factor IIS putative
blastp_kegg lcl|vvi:100263760 53 221 + 169 Gaps:5 46.32 367 61.18 1e-63 transcription elongation factor A protein 3-like
blastp_kegg lcl|atr:s00077p00115030 53 221 + 169 Gaps:5 47.22 360 60.59 7e-63 AMTR_s00077p00115030 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1058130 53 221 + 169 Gaps:7 49.71 342 61.76 2e-62 transcription elongation factor s-II putative
blastp_kegg lcl|cic:CICLE_v10011982mg 53 221 + 169 Gaps:5 45.33 375 59.41 8e-62 hypothetical protein
blastp_kegg lcl|cit:102631170 53 221 + 169 Gaps:5 45.33 375 59.41 8e-62 transcription elongation factor A protein 3-like
blastp_kegg lcl|pda:103706242 53 221 + 169 Gaps:16 46.21 383 58.19 4e-59 transcription elongation factor A protein 1-like
blastp_kegg lcl|csv:101216554 51 221 + 171 Gaps:6 46.88 369 57.80 2e-58 transcription elongation factor A protein 3-like
blastp_pdb 1y1y_S 50 222 + 173 Gaps:10 93.30 179 35.93 2e-24 mol:protein length:179 Transcription elongation factor S-II
blastp_pdb 1y1v_S 50 222 + 173 Gaps:10 93.30 179 35.93 2e-24 mol:protein length:179 Transcription elongation factor S-II
blastp_pdb 1pqv_S 50 221 + 172 Gaps:10 53.72 309 36.14 1e-23 mol:protein length:309 Transcription elongation factor S-II
blastp_pdb 3gtm_S 57 222 + 166 Gaps:10 92.49 173 36.25 2e-23 mol:protein length:173 Transcription elongation factor S-II
blastp_pdb 3po3_S 50 222 + 173 Gaps:10 93.82 178 34.73 3e-22 mol:protein length:178 Transcription elongation factor S-II
blastp_pdb 1tfi_A 180 221 + 42 none 84.00 50 59.52 2e-14 mol:protein length:50 TRANSCRIPTIONAL ELONGATION FACTOR SII
blastp_pdb 3ndq_A 61 152 + 92 Gaps:4 81.48 108 40.91 1e-10 mol:protein length:108 Transcription elongation factor A protein 1
blastp_pdb 2dme_A 57 151 + 95 Gaps:1 78.33 120 37.23 5e-10 mol:protein length:120 PHD finger protein 3
blastp_pdb 3qt1_I 145 221 + 77 none 57.89 133 35.06 2e-09 mol:protein length:133 DNA-directed RNA polymerase II subunit RPB9
blastp_uniprot_sprot sp|P20232|TFS2_DROME 61 221 + 161 Gaps:11 49.20 313 42.21 7e-31 Transcription elongation factor S-II OS Drosophila melanogaster GN TfIIS PE 2 SV 1
blastp_uniprot_sprot sp|Q29RL9|TCEA1_BOVIN 57 221 + 165 Gaps:14 52.82 301 42.14 3e-30 Transcription elongation factor A protein 1 OS Bos taurus GN TCEA1 PE 2 SV 1
blastp_uniprot_sprot sp|P23193|TCEA1_HUMAN 57 221 + 165 Gaps:14 52.82 301 42.14 3e-30 Transcription elongation factor A protein 1 OS Homo sapiens GN TCEA1 PE 1 SV 2
blastp_uniprot_sprot sp|Q2KI09|TCEA3_BOVIN 58 221 + 164 Gaps:2 46.42 349 38.27 6e-30 Transcription elongation factor A protein 3 OS Bos taurus GN TCEA3 PE 2 SV 1
blastp_uniprot_sprot sp|Q4KLL0|TCEA1_RAT 57 221 + 165 Gaps:14 52.82 301 41.51 6e-30 Transcription elongation factor A protein 1 OS Rattus norvegicus GN Tcea1 PE 2 SV 1
blastp_uniprot_sprot sp|P10711|TCEA1_MOUSE 58 221 + 164 Gaps:10 53.82 301 39.51 7e-30 Transcription elongation factor A protein 1 OS Mus musculus GN Tcea1 PE 1 SV 2
blastp_uniprot_sprot sp|O75764|TCEA3_HUMAN 58 221 + 164 Gaps:2 46.55 348 38.27 7e-30 Transcription elongation factor A protein 3 OS Homo sapiens GN TCEA3 PE 2 SV 2
blastp_uniprot_sprot sp|P52652|TFS2_CAEEL 83 221 + 139 Gaps:4 44.48 308 43.80 8e-29 Putative transcription elongation factor S-II OS Caenorhabditis elegans GN T24H10.1 PE 3 SV 1
blastp_uniprot_sprot sp|Q148K0|TCEA2_BOVIN 88 221 + 134 Gaps:6 44.00 300 43.18 1e-28 Transcription elongation factor A protein 2 OS Bos taurus GN TCEA2 PE 2 SV 1
blastp_uniprot_sprot sp|Q15560|TCEA2_HUMAN 58 221 + 164 Gaps:6 54.18 299 37.04 1e-28 Transcription elongation factor A protein 2 OS Homo sapiens GN TCEA2 PE 1 SV 1
rpsblast_cdd gnl|CDD|211647 22 221 + 200 Gaps:12 66.67 300 41.00 3e-41 TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 58 159 102 SM00510 none Domain in the central regions of transcription elongation factor S-II (and elsewhere) IPR017890
PANTHER 55 221 167 PTHR11477 none none none
SMART 183 222 40 SM00440 none C2C2 Zinc finger IPR001222
SUPERFAMILY 50 151 102 SSF46942 none none IPR003618
PIRSF 17 222 206 PIRSF006704 none none IPR016492
ProSiteProfiles 181 221 41 PS51133 none Zinc finger TFIIS-type profile. IPR001222
Coils 148 176 29 Coil none none none
Pfam 53 168 116 PF07500 none Transcription factor S-II (TFIIS), central domain IPR003618
SUPERFAMILY 162 221 60 SSF57783 none none none
Pfam 183 221 39 PF01096 none Transcription factor S-II (TFIIS) IPR001222
Gene3D 44 151 108 G3DSA:1.10.472.30 none none IPR003618
ProSiteProfiles 56 176 121 PS51321 none TFIIS central domain profile. IPR003618
ProSitePatterns 185 220 36 PS00466 none Zinc finger TFIIS-type signature. IPR001222
Gene3D 157 221 65 G3DSA:2.20.25.10 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting