Protein : Qrob_P0090740.2 Q. robur
Protein Identifier  ? Qrob_P0090740.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) 1.1.3.6 - Cholesterol oxidase. Code Enzyme  EC:1.1.3.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1082  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102613972 20 1060 + 1041 Gaps:31 90.82 1176 68.63 0.0 uncharacterized LOC102613972
blastp_kegg lcl|fve:101300086 20 1079 + 1060 Gaps:84 92.93 1203 66.91 0.0 uncharacterized protein LOC101300086
blastp_kegg lcl|rcu:RCOM_0293440 20 1057 + 1038 Gaps:44 92.11 1153 67.42 0.0 hypothetical protein
blastp_kegg lcl|fve:101300377 20 1070 + 1051 Gaps:91 91.36 1134 68.82 0.0 uncharacterized protein LOC101300377
blastp_kegg lcl|pmum:103334570 20 1062 + 1043 Gaps:62 91.37 1205 66.30 0.0 uncharacterized LOC103334570
blastp_kegg lcl|cmo:103500910 20 1064 + 1045 Gaps:60 91.35 1203 63.15 0.0 uncharacterized LOC103500910
blastp_kegg lcl|rcu:RCOM_0293450 20 1065 + 1046 Gaps:142 90.66 1092 65.56 0.0 hypothetical protein
blastp_kegg lcl|mdm:103449542 20 830 + 811 Gaps:39 88.05 954 68.93 0.0 uncharacterized LOC103449542
blastp_kegg lcl|cic:CICLE_v10011029mg 222 1060 + 839 Gaps:44 97.66 898 63.97 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa022910mg 287 1061 + 775 Gaps:47 97.74 841 64.84 0.0 hypothetical protein
blastp_pdb 1b8s_A 39 452 + 414 Gaps:85 77.58 504 28.64 2e-09 mol:protein length:504 PROTEIN (CHOLESTEROL OXIDASE)
blastp_pdb 2gew_A 348 452 + 105 Gaps:20 21.63 504 37.61 4e-07 mol:protein length:504 Cholesterol oxidase
blastp_pdb 1n4w_A 348 452 + 105 Gaps:20 21.63 504 37.61 4e-07 mol:protein length:504 Cholesterol oxidase
blastp_pdb 1n4v_A 348 452 + 105 Gaps:20 21.63 504 37.61 4e-07 mol:protein length:504 Cholesterol oxidase
blastp_pdb 1n4u_A 348 452 + 105 Gaps:20 21.63 504 37.61 4e-07 mol:protein length:504 Cholesterol oxidase
blastp_pdb 1n1p_A 348 452 + 105 Gaps:20 21.63 504 37.61 4e-07 mol:protein length:504 Cholesterol oxidase
blastp_pdb 1mxt_A 348 452 + 105 Gaps:20 21.63 504 37.61 4e-07 mol:protein length:504 CHOLESTEROL OXIDASE
blastp_pdb 1b4v_A 348 452 + 105 Gaps:20 21.63 504 37.61 4e-07 mol:protein length:504 PROTEIN (CHOLESTEROL OXIDASE)
blastp_pdb 3cnj_A 348 452 + 105 Gaps:20 21.84 499 37.61 5e-07 mol:protein length:499 Cholesterol oxidase
blastp_pdb 3gyi_A 348 452 + 105 Gaps:20 21.63 504 36.70 1e-06 mol:protein length:504 Cholesterol oxidase
blastp_uniprot_sprot sp|Q8K2A6|LIPM_MOUSE 673 805 + 133 Gaps:17 33.65 422 31.69 5e-07 Lipase member M OS Mus musculus GN Lipm PE 2 SV 1
blastp_uniprot_sprot sp|Q57307|CHOD_MYCTU 20 246 + 227 Gaps:29 41.87 578 26.03 2e-06 Cholesterol oxidase OS Mycobacterium tuberculosis GN choD PE 1 SV 1
blastp_uniprot_sprot sp|P12676|CHOD_STRS0 348 452 + 105 Gaps:20 19.96 546 37.61 2e-06 Cholesterol oxidase OS Streptomyces sp. (strain SA-COO) GN choA PE 1 SV 1
blastp_uniprot_sprot sp|P04634|LIPG_RAT 682 805 + 124 Gaps:18 33.92 395 29.10 6e-06 Gastric triacylglycerol lipase OS Rattus norvegicus GN Lipf PE 2 SV 1
rpsblast_cdd gnl|CDD|32458 34 451 + 418 Gaps:67 83.21 542 16.63 2e-13 COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|109776 25 213 + 189 Gaps:58 82.11 218 24.58 5e-07 pfam00732 GMC_oxred_N GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
rpsblast_kog gnl|CDD|37835 670 1025 + 356 Gaps:80 89.83 403 23.48 2e-18 KOG2624 KOG2624 KOG2624 Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism].

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 678 1021 344 G3DSA:3.40.50.1820 none none IPR029058
SUPERFAMILY 397 452 56 SSF51905 none none none
SUPERFAMILY 23 94 72 SSF51905 none none none
SUPERFAMILY 131 238 108 SSF51905 none none none
Phobius 1058 1079 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 365 451 87 G3DSA:3.50.50.60 none none none
Gene3D 547 600 54 G3DSA:3.50.50.60 none none none
Gene3D 13 79 67 G3DSA:3.50.50.60 none none none
Gene3D 139 240 102 G3DSA:3.50.50.60 none none none
SUPERFAMILY 674 1020 347 SSF53474 none none IPR029058
PANTHER 25 493 469 PTHR10668 none none none
ProSitePatterns 133 144 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
ProSiteProfiles 124 153 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
Phobius 1 1057 1057 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 25 493 469 PTHR10668:SF65 none none none
Pfam 715 1000 286 PF12697 none Alpha/beta hydrolase family IPR000073
Phobius 1080 1081 2 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 1057 1079 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting