Protein : Qrob_P0090550.2 Q. robur
Protein Identifier  ? Qrob_P0090550.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K03238 - translation initiation factor eIF-2 beta subunit Gene Prediction Quality  validated
Protein length 

Sequence

Length: 163  
Kegg Orthology  K03238
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101220978 1 136 + 136 Gaps:44 62.45 269 65.48 7e-57 eukaryotic translation initiation factor 2 subunit beta-like
blastp_kegg lcl|cmo:103500512 1 136 + 136 Gaps:43 62.59 270 66.27 2e-56 eukaryotic translation initiation factor 2 subunit beta
blastp_kegg lcl|vvi:100263785 11 136 + 126 Gaps:38 60.22 269 66.67 6e-56 eukaryotic translation initiation factor 2 subunit beta-like
blastp_kegg lcl|tcc:TCM_024370 1 136 + 136 Gaps:43 61.74 264 66.26 3e-52 Eukaryotic translation initiation factor 2 subunit beta
blastp_kegg lcl|fve:101306562 1 136 + 136 Gaps:45 62.59 270 63.91 1e-51 eukaryotic translation initiation factor 2 subunit beta-like
blastp_kegg lcl|pop:POPTR_0019s15180g 1 136 + 136 Gaps:46 62.73 271 62.94 3e-51 POPTRDRAFT_574465 Eukaryotic translation initiation factor 2 beta subunit family protein
blastp_kegg lcl|cit:102610441 12 136 + 125 Gaps:39 54.36 298 64.20 3e-51 eukaryotic translation initiation factor 2 subunit beta-like
blastp_kegg lcl|cic:CICLE_v10016252mg 12 136 + 125 Gaps:39 62.79 258 63.58 2e-50 hypothetical protein
blastp_kegg lcl|mdm:103447259 1 136 + 136 Gaps:42 100.00 170 62.35 7e-50 eukaryotic translation initiation factor 2 subunit beta-like
blastp_kegg lcl|gmx:100783618 1 136 + 136 Gaps:41 59.64 280 61.68 7e-50 eukaryotic translation initiation factor 2 subunit beta-like
blastp_uniprot_sprot sp|O24473|IF2B_WHEAT 14 136 + 123 Gaps:41 59.26 270 62.50 6e-49 Eukaryotic translation initiation factor 2 subunit beta OS Triticum aestivum PE 1 SV 1
blastp_uniprot_sprot sp|P55871|IF2B_MALDO 1 136 + 136 Gaps:42 62.73 271 59.41 5e-47 Eukaryotic translation initiation factor 2 subunit beta OS Malus domestica PE 2 SV 2
blastp_uniprot_sprot sp|Q41969|IF2B_ARATH 1 136 + 136 Gaps:45 63.06 268 53.25 8e-43 Eukaryotic translation initiation factor 2 subunit beta OS Arabidopsis thaliana GN EMB1401 PE 2 SV 3
blastp_uniprot_sprot sp|Q99L45|IF2B_MOUSE 46 135 + 90 Gaps:5 26.89 331 56.18 1e-24 Eukaryotic translation initiation factor 2 subunit 2 OS Mus musculus GN Eif2s2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R4T9|IF2B_PONAB 46 135 + 90 Gaps:5 27.33 333 52.75 3e-22 Eukaryotic translation initiation factor 2 subunit 2 OS Pongo abelii GN EIF2S2 PE 2 SV 1
blastp_uniprot_sprot sp|P20042|IF2B_HUMAN 46 135 + 90 Gaps:5 27.33 333 52.75 3e-22 Eukaryotic translation initiation factor 2 subunit 2 OS Homo sapiens GN EIF2S2 PE 1 SV 2
blastp_uniprot_sprot sp|P41035|IF2B_RABIT 46 135 + 90 Gaps:1 27.33 333 50.55 3e-22 Eukaryotic translation initiation factor 2 subunit 2 OS Oryctolagus cuniculus GN EIF2S2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5E9D0|IF2B_BOVIN 46 135 + 90 Gaps:1 27.33 333 50.55 4e-22 Eukaryotic translation initiation factor 2 subunit 2 OS Bos taurus GN EIF2S2 PE 2 SV 1
blastp_uniprot_sprot sp|Q54T27|IF2B_DICDI 70 136 + 67 Gaps:1 20.82 317 54.55 3e-20 Eukaryotic translation initiation factor 2 subunit 2 OS Dictyostelium discoideum GN eif2s2 PE 3 SV 1
blastp_uniprot_sprot sp|P41375|IF2B_DROME 76 136 + 61 Gaps:1 19.87 312 61.29 2e-18 Eukaryotic translation initiation factor 2 subunit 2 OS Drosophila melanogaster GN eIF-2beta PE 1 SV 1
rpsblast_cdd gnl|CDD|145177 97 136 + 40 Gaps:1 32.80 125 46.34 9e-10 pfam01873 eIF-5_eIF-2B Domain found in IF2B/IF5. This family includes the N terminus of eIF-5 and the C terminus of eIF-2 beta. This region corresponds to the whole of the archaebacterial eIF-2 beta homologue. The region contains a putative zinc binding C4 finger.
rpsblast_cdd gnl|CDD|128901 107 136 + 30 none 27.27 110 56.67 2e-09 smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
rpsblast_kog gnl|CDD|37979 23 136 + 114 Gaps:7 46.32 231 51.40 3e-26 KOG2768 KOG2768 KOG2768 Translation initiation factor 2 beta subunit (eIF-2beta) [Translation ribosomal structure and biogenesis].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 82 135 54 SSF100966 none none IPR016189
Gene3D 117 135 19 G3DSA:3.30.30.50 none none IPR016189
Pfam 98 136 39 PF01873 none Domain found in IF2B/IF5 IPR002735
PANTHER 23 136 114 PTHR23001 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting