Protein : Qrob_P0090260.2 Q. robur
Protein Identifier  ? Qrob_P0090260.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR19920 - WD40 PROTEIN CIAO1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 379  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016226 iron-sulfur cluster assembly The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
GO:0097361 CIA complex The cytosolic iron-sulfur protein assembly (CIA) complex mediates the incorporation of iron-sulfur clusters into apoproteins involved in DNA metabolism and genomic integrity.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_022583 1 369 + 369 Gaps:54 99.71 350 82.23 0.0 Transducin/WD40 repeat-like superfamily protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa007909mg 1 368 + 368 Gaps:57 99.43 351 82.23 0.0 hypothetical protein
blastp_kegg lcl|pmum:103339679 1 368 + 368 Gaps:57 99.43 351 81.95 0.0 probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog
blastp_kegg lcl|vvi:100256192 1 368 + 368 Gaps:52 99.71 344 83.09 0.0 probable cytosolic iron-sulfur protein assembly protein-like
blastp_kegg lcl|cic:CICLE_v10012077mg 1 353 + 353 Gaps:11 99.43 352 78.86 0.0 hypothetical protein
blastp_kegg lcl|csv:101205696 1 369 + 369 Gaps:67 99.71 350 79.37 0.0 probable cytosolic iron-sulfur protein assembly protein-like
blastp_kegg lcl|rcu:RCOM_0516960 1 369 + 369 Gaps:54 99.71 349 81.90 0.0 WD-repeat protein putative (EC:2.3.1.48)
blastp_kegg lcl|cit:102625463 1 353 + 353 Gaps:11 99.43 352 78.86 0.0 probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog
blastp_kegg lcl|cmo:103486606 1 374 + 374 Gaps:67 99.71 350 79.37 0.0 probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog
blastp_kegg lcl|pop:POPTR_0001s22820g 5 369 + 365 Gaps:54 98.29 350 82.27 0.0 POPTRDRAFT_172143 transducin family protein
blastp_pdb 3fm0_A 9 369 + 361 Gaps:100 95.36 345 65.05 1e-105 mol:protein length:345 Protein CIAO1
blastp_pdb 2hes_X 9 351 + 343 Gaps:64 97.88 330 47.99 3e-67 mol:protein length:330 Ydr267cp
blastp_pdb 1vyh_T 16 358 + 343 Gaps:149 83.90 410 46.51 3e-23 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_S 16 358 + 343 Gaps:149 83.90 410 46.51 3e-23 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_P 16 358 + 343 Gaps:149 83.90 410 46.51 3e-23 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_O 16 358 + 343 Gaps:149 83.90 410 46.51 3e-23 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_L 16 358 + 343 Gaps:149 83.90 410 46.51 3e-23 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_K 16 358 + 343 Gaps:149 83.90 410 46.51 3e-23 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_H 16 358 + 343 Gaps:149 83.90 410 46.51 3e-23 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_G 16 358 + 343 Gaps:149 83.90 410 46.51 3e-23 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_uniprot_sprot sp|A7RWD2|CIAO1_NEMVE 9 369 + 361 Gaps:117 100.00 327 70.03 2e-122 Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS Nematostella vectensis GN v1g226592 PE 3 SV 1
blastp_uniprot_sprot sp|B4GDM7|CIAO1_DROPE 9 369 + 361 Gaps:74 99.10 335 56.93 2e-111 Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS Drosophila persimilis GN Ciao1 PE 3 SV 2
blastp_uniprot_sprot sp|Q292E8|CIAO1_DROPS 9 369 + 361 Gaps:156 99.40 335 62.76 1e-110 Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS Drosophila pseudoobscura pseudoobscura GN Ciao1 PE 3 SV 1
blastp_uniprot_sprot sp|B3NQR5|CIAO1_DROER 9 369 + 361 Gaps:74 98.81 335 56.80 1e-110 Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS Drosophila erecta GN Ciao1 PE 3 SV 1
blastp_uniprot_sprot sp|B3MC74|CIAO1_DROAN 9 351 + 343 Gaps:26 98.81 335 51.36 1e-109 Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS Drosophila ananassae GN Ciao1 PE 3 SV 1
blastp_uniprot_sprot sp|B4P7Q3|CIAO1_DROYA 9 369 + 361 Gaps:74 98.81 335 55.29 2e-109 Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS Drosophila yakuba GN Ciao1 PE 3 SV 1
blastp_uniprot_sprot sp|B5X212|CIO1B_SALSA 9 375 + 367 Gaps:92 98.20 333 65.75 3e-109 Probable cytosolic iron-sulfur protein assembly protein ciao1-B OS Salmo salar GN ciao1b PE 2 SV 1
blastp_uniprot_sprot sp|Q7K1Y4|CIAO1_DROME 9 369 + 361 Gaps:74 98.81 335 55.89 3e-109 Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS Drosophila melanogaster GN Ciao1 PE 1 SV 1
blastp_uniprot_sprot sp|B4QFZ8|CIAO1_DROSI 9 369 + 361 Gaps:74 99.10 335 55.72 5e-109 Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS Drosophila simulans GN Ciao1 PE 3 SV 1
blastp_uniprot_sprot sp|B4HRQ6|CIAO1_DROSE 9 369 + 361 Gaps:74 99.10 335 55.72 8e-109 Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS Drosophila sechellia GN Ciao1 PE 3 SV 1

34 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 213 254 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PANTHER 5 355 351 PTHR19920 none none none
ProSiteProfiles 16 54 39 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
SUPERFAMILY 9 349 341 SSF50978 none none IPR017986
ProSitePatterns 337 351 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
ProSiteProfiles 120 161 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Gene3D 11 55 45 G3DSA:2.130.10.10 none none IPR015943
ProSitePatterns 232 246 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
PANTHER 5 355 351 PTHR19920:SF0 none none none
ProSiteProfiles 165 196 32 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 317 353 37 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 16 359 344 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
ProSiteProfiles 76 108 33 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PRINTS 232 246 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 356 370 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 337 351 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
Hamap 10 353 344 MF_03037 none Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. IPR028608
ProSitePatterns 139 153 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
SMART 113 152 40 SM00320 none WD40 repeats IPR001680
SMART 158 197 40 SM00320 none WD40 repeats IPR001680
SMART 9 54 46 SM00320 none WD40 repeats IPR001680
SMART 259 298 40 SM00320 none WD40 repeats IPR001680
SMART 202 245 44 SM00320 none WD40 repeats IPR001680
SMART 309 350 42 SM00320 none WD40 repeats IPR001680
SMART 68 108 41 SM00320 none WD40 repeats IPR001680
Pfam 115 152 38 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 357 369 13 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 268 296 29 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 316 350 35 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 160 196 37 PF00400 none WD domain, G-beta repeat IPR001680

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting