Protein : Qrob_P0089750.2 Q. robur
Protein Identifier  ? Qrob_P0089750.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=1) KOG0263//KOG0266//KOG0272//KOG0274//KOG0276//KOG0279//KOG0285//KOG0292//KOG0295//KOG0319 - Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]. // WD40 repeat-containing protein [General function prediction only]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // Cdc4 and related F-box and WD-40 proteins [General function prediction only]. // Vesicle coat complex COPI beta' subunit [Intracellular trafficking secretion and vesicular transport]. // G protein beta subunit-like protein [Signal transduction mechanisms]. // Pleiotropic regulator 1 [RNA processing and modification]. // Vesicle coat complex COPI alpha subunit [Intracellular trafficking secretion and vesicular transport]. // WD40 repeat-containing protein [Function unknown]. // WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 954  
Kegg Orthology  K17302
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005198 structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.
GO:0030117 membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_028674 41 953 + 913 Gaps:20 99.13 916 92.73 0.0 Coatomer beta' subunit isoform 1
blastp_kegg lcl|rcu:RCOM_0980380 41 953 + 913 Gaps:22 99.12 914 91.72 0.0 coatomer beta subunit putative (EC:2.7.11.7)
blastp_kegg lcl|pmum:103327971 41 943 + 903 Gaps:18 98.48 920 91.39 0.0 coatomer subunit beta'-2
blastp_kegg lcl|cam:101502055 41 953 + 913 Gaps:20 99.13 916 90.86 0.0 coatomer subunit beta'-2-like
blastp_kegg lcl|pper:PRUPE_ppa001045mg 41 943 + 903 Gaps:18 98.48 920 91.28 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s17940g 41 953 + 913 Gaps:14 99.13 922 90.26 0.0 POPTRDRAFT_841719 hypothetical protein
blastp_kegg lcl|vvi:100261812 34 943 + 910 Gaps:17 94.43 952 91.77 0.0 coatomer subunit beta'-2-like
blastp_kegg lcl|cit:102622899 41 943 + 903 Gaps:21 98.14 914 91.19 0.0 coatomer subunit beta'-2-like
blastp_kegg lcl|cic:CICLE_v10027174mg 41 943 + 903 Gaps:36 98.17 929 89.58 0.0 hypothetical protein
blastp_kegg lcl|pxb:103948847 41 953 + 913 Gaps:18 99.13 918 91.10 0.0 coatomer subunit beta'-2
blastp_pdb 3mkq_E 43 809 + 767 Gaps:22 96.68 814 46.89 0.0 mol:protein length:814 Coatomer beta'-subunit
blastp_pdb 3mkq_C 43 809 + 767 Gaps:22 96.68 814 46.89 0.0 mol:protein length:814 Coatomer beta'-subunit
blastp_pdb 3mkq_A 43 809 + 767 Gaps:22 96.68 814 46.89 0.0 mol:protein length:814 Coatomer beta'-subunit
blastp_pdb 1vyh_T 43 335 + 293 Gaps:56 74.39 410 43.28 4e-29 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_S 43 335 + 293 Gaps:56 74.39 410 43.28 4e-29 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_P 43 335 + 293 Gaps:56 74.39 410 43.28 4e-29 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_O 43 335 + 293 Gaps:56 74.39 410 43.28 4e-29 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_L 43 335 + 293 Gaps:56 74.39 410 43.28 4e-29 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_K 43 335 + 293 Gaps:56 74.39 410 43.28 4e-29 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_H 43 335 + 293 Gaps:56 74.39 410 43.28 4e-29 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_uniprot_sprot sp|Q9C827|COB22_ARATH 41 953 + 913 Gaps:36 99.14 926 85.40 0.0 Coatomer subunit beta'-2 OS Arabidopsis thaliana GN At1g52360 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAA0|COB21_ARATH 41 943 + 903 Gaps:17 98.37 920 84.64 0.0 Coatomer subunit beta'-1 OS Arabidopsis thaliana GN At1g79990 PE 2 SV 2
blastp_uniprot_sprot sp|Q5VQ78|COB21_ORYSJ 41 943 + 903 Gaps:25 98.46 907 84.88 0.0 Coatomer subunit beta'-1 OS Oryza sativa subsp. japonica GN Os06g0143900 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L828|COB23_ARATH 41 938 + 898 Gaps:18 98.46 909 84.92 0.0 Coatomer subunit beta'-3 OS Arabidopsis thaliana GN At3g15980 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H8D5|COB22_ORYSJ 41 948 + 908 Gaps:35 98.68 910 82.96 0.0 Coatomer subunit beta'-2 OS Oryza sativa subsp. japonica GN Os02g0209100 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H8D6|COB23_ORYSJ 41 948 + 908 Gaps:35 98.68 910 82.63 0.0 Putative coatomer subunit beta'-3 OS Oryza sativa subsp. japonica GN Os02g0209000 PE 3 SV 2
blastp_uniprot_sprot sp|O55029|COPB2_MOUSE 43 856 + 814 Gaps:6 90.17 905 61.52 0.0 Coatomer subunit beta' OS Mus musculus GN Copb2 PE 2 SV 2
blastp_uniprot_sprot sp|Q5R664|COPB2_PONAB 43 929 + 887 Gaps:21 98.01 906 58.22 0.0 Coatomer subunit beta' OS Pongo abelii GN COPB2 PE 2 SV 1
blastp_uniprot_sprot sp|P35605|COPB2_BOVIN 43 856 + 814 Gaps:6 90.07 906 61.40 0.0 Coatomer subunit beta' OS Bos taurus GN COPB2 PE 1 SV 3
blastp_uniprot_sprot sp|P35606|COPB2_HUMAN 43 856 + 814 Gaps:6 90.07 906 61.40 0.0 Coatomer subunit beta' OS Homo sapiens GN COPB2 PE 1 SV 2

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 15 15 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Coils 890 921 32 Coil none none none
Phobius 1 36 36 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 16 28 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
ProSiteProfiles 256 297 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 212 255 44 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PIRSF 38 924 887 PIRSF005567 none none IPR016453
SUPERFAMILY 42 328 287 SSF50978 none none IPR017986
Phobius 29 36 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 634 780 147 G3DSA:1.25.40.10 none none IPR011990
PRINTS 189 203 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 275 289 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 233 247 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
ProSiteProfiles 169 211 43 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Gene3D 398 515 118 G3DSA:2.130.10.10 none none IPR015943
Pfam 350 794 445 PF04053 "Reactome:REACT_11123" Coatomer WD associated region IPR006692
Phobius 37 953 917 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 126 158 33 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
SMART 38 77 40 SM00320 none WD40 repeats IPR001680
SMART 162 202 41 SM00320 none WD40 repeats IPR001680
SMART 81 116 36 SM00320 none WD40 repeats IPR001680
SMART 249 288 40 SM00320 none WD40 repeats IPR001680
SMART 205 246 42 SM00320 none WD40 repeats IPR001680
SMART 119 158 40 SM00320 none WD40 repeats IPR001680
PANTHER 42 948 907 PTHR19876 none none none
SUPERFAMILY 376 521 146 SSF50978 none none IPR017986
SUPERFAMILY 258 340 83 SSF50978 none none IPR017986
Pfam 163 202 40 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 251 288 38 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 122 158 37 PF00400 none WD domain, G-beta repeat IPR001680

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 93   Mitochondrion 2 0.030 0.799 NON-PLANT 93