Protein : Qrob_P0089580.2 Q. robur
Protein Identifier  ? Qrob_P0089580.2 Organism . Name  Quercus robur
Score  94.0 Score Type  egn
Protein Description  (M=2) PTHR12952 - SYS1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 154  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0000139 Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_028683 1 150 + 150 none 98.68 152 88.00 1e-92 Structural molecules
blastp_kegg lcl|sot:102602819 1 150 + 150 none 98.68 152 86.67 8e-91 protein SYS1 homolog
blastp_kegg lcl|sly:101249162 1 150 + 150 none 85.71 175 84.67 1e-89 protein SYS1 homolog
blastp_kegg lcl|sot:102603350 1 150 + 150 none 85.71 175 84.00 2e-89 protein SYS1 homolog
blastp_kegg lcl|cic:CICLE_v10026697mg 1 150 + 150 none 98.68 152 83.33 3e-88 hypothetical protein
blastp_kegg lcl|cit:102622042 1 150 + 150 none 94.34 159 82.67 6e-88 protein SYS1 homolog
blastp_kegg lcl|cit:102621314 1 150 + 150 none 98.68 152 82.67 9e-88 protein SYS1 homolog
blastp_kegg lcl|gmx:100817072 1 150 + 150 none 98.68 152 80.00 4e-86 protein SYS1 homolog
blastp_kegg lcl|cmo:103500569 1 150 + 150 none 98.68 152 80.00 2e-85 protein SYS1 homolog
blastp_kegg lcl|gmx:100783390 1 150 + 150 none 98.68 152 80.67 3e-85 protein SYS1 homolog
blastp_uniprot_sprot sp|Q55E69|SYS1_DICDI 1 151 + 151 none 65.09 232 43.05 5e-40 Protein SYS1 homolog OS Dictyostelium discoideum GN sys1 PE 3 SV 1
blastp_uniprot_sprot sp|A7S6Y0|SYS1_NEMVE 3 146 + 144 none 91.72 157 42.36 2e-34 Protein SYS1 homolog OS Nematostella vectensis GN sys1 PE 3 SV 1
blastp_uniprot_sprot sp|A4K2W1|SYS1_PONAB 8 146 + 139 Gaps:1 89.74 156 42.86 3e-31 Protein SYS1 homolog OS Pongo abelii GN SYS1 PE 3 SV 1
blastp_uniprot_sprot sp|A4K2N5|SYS1_PAPAN 8 146 + 139 Gaps:1 89.74 156 42.86 3e-31 Protein SYS1 homolog OS Papio anubis GN SYS1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8N2H4|SYS1_HUMAN 8 146 + 139 Gaps:1 89.74 156 42.86 3e-31 Protein SYS1 homolog OS Homo sapiens GN SYS1 PE 1 SV 1
blastp_uniprot_sprot sp|Q1RMQ3|SYS1_BOVIN 8 146 + 139 Gaps:1 89.74 156 42.86 5e-31 Protein SYS1 homolog OS Bos taurus GN SYS1 PE 2 SV 1
blastp_uniprot_sprot sp|Q78S06|SYS1_MOUSE 8 146 + 139 Gaps:1 89.74 156 42.14 9e-31 Protein SYS1 homolog OS Mus musculus GN Sys1 PE 2 SV 1
rpsblast_cdd gnl|CDD|192384 3 145 + 143 Gaps:1 100.00 144 40.97 1e-41 pfam09801 SYS1 Integral membrane protein S linking to the trans Golgi network. Members of this family are integral membrane proteins involved in protein trafficking between the late Golgi and endosome. They may also serve as a receptor for ADP-ribosylation factor-related protein 1 (ARFRP1). Sys1p is a small integral membrane protein with four predicted transmembrane domains that localises to the Trans Golgi network TGN in yeast and human cells.
rpsblast_kog gnl|CDD|39895 8 145 + 138 Gaps:1 86.88 160 27.34 2e-16 KOG4697 KOG4697 KOG4697 Integral membrane protein involved in transport between the late Golgi and endosome [Intracellular trafficking secretion and vesicular transport].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 90 110 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 116 136 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PIRSF 1 152 152 PIRSF031402 none none IPR016973
Pfam 4 145 142 PF09801 none Integral membrane protein S linking to the trans Golgi network IPR019185
Phobius 40 58 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 111 115 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 84 89 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 59 83 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 137 153 17 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 11 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 12 39 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 145 145 PTHR12952 none none none

4 Localization

Analysis Start End Length
TMHMM 93 110 17
TMHMM 58 80 22
TMHMM 12 34 22
TMHMM 114 136 22

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 37   Secretory pathway 1 0.998 0.010 NON-PLANT 37