Protein : Qrob_P0088850.2 Q. robur
Protein Identifier  ? Qrob_P0088850.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR31602:SF3 - GROWTH-REGULATING FACTOR 9 (PTHR31602:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 401  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0032502 developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100249368 1 400 + 400 Gaps:26 100.00 394 71.57 0.0 uncharacterized LOC100249368
blastp_kegg lcl|cit:102615240 1 400 + 400 Gaps:29 100.00 407 70.76 3e-180 growth-regulating factor 3-like
blastp_kegg lcl|cic:CICLE_v10011856mg 1 400 + 400 Gaps:30 100.00 412 69.66 6e-180 hypothetical protein
blastp_kegg lcl|pmum:103339719 1 400 + 400 Gaps:22 100.00 392 72.96 1e-176 growth-regulating factor 3
blastp_kegg lcl|pvu:PHAVU_001G187500g 1 400 + 400 Gaps:28 100.00 386 72.54 3e-176 hypothetical protein
blastp_kegg lcl|pxb:103955207 1 400 + 400 Gaps:14 100.00 396 70.96 3e-175 growth-regulating factor 3-like
blastp_kegg lcl|tcc:TCM_022490 1 400 + 400 Gaps:41 100.00 397 74.06 2e-171 Growth-regulating factor 3 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa006912mg 1 400 + 400 Gaps:24 100.00 390 73.08 3e-171 hypothetical protein
blastp_kegg lcl|pxb:103944286 1 400 + 400 Gaps:14 100.00 394 70.05 8e-170 growth-regulating factor 3-like
blastp_kegg lcl|mdm:103424235 1 400 + 400 Gaps:27 100.00 397 69.52 1e-163 growth-regulating factor 3-like
blastp_uniprot_sprot sp|Q8L8A7|GRF4_ARATH 1 387 + 387 Gaps:35 97.89 380 56.18 3e-98 Growth-regulating factor 4 OS Arabidopsis thaliana GN GRF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SJR5|GRF3_ARATH 1 205 + 205 Gaps:22 48.99 398 65.64 2e-71 Growth-regulating factor 3 OS Arabidopsis thaliana GN GRF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZIK5|GRF4_ORYSJ 85 223 + 139 Gaps:16 34.26 394 53.33 5e-36 Growth-regulating factor 4 OS Oryza sativa subsp. japonica GN GRF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY6|GRF3_ORYSJ 85 197 + 113 Gaps:11 26.87 387 61.54 1e-35 Growth-regulating factor 3 OS Oryza sativa subsp. japonica GN GRF3 PE 3 SV 2
blastp_uniprot_sprot sp|Q8L8A8|GRF2_ARATH 85 213 + 129 Gaps:9 23.18 535 59.68 2e-35 Growth-regulating factor 2 OS Arabidopsis thaliana GN GRF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6EPP9|GRF10_ORYSJ 85 228 + 144 Gaps:21 63.03 211 56.39 2e-34 Growth-regulating factor 10 OS Oryza sativa subsp. japonica GN GRF10 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWX7|GRF12_ORYSJ 70 197 + 128 Gaps:4 52.54 236 56.45 2e-34 Growth-regulating factor 12 OS Oryza sativa subsp. japonica GN GRF12 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY4|GRF5_ORYSJ 80 214 + 135 Gaps:9 40.80 348 50.00 4e-34 Growth-regulating factor 5 OS Oryza sativa subsp. japonica GN GRF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY2|GRF7_ORYSJ 63 197 + 135 Gaps:9 31.63 411 54.62 3e-33 Growth-regulating factor 7 OS Oryza sativa subsp. japonica GN GRF7 PE 2 SV 2
blastp_uniprot_sprot sp|Q6AWY8|GRF1_ORYSJ 85 198 + 114 Gaps:6 29.22 397 55.17 5e-33 Growth-regulating factor 1 OS Oryza sativa subsp. japonica GN GRF1 PE 3 SV 1
rpsblast_cdd gnl|CDD|192171 154 197 + 44 none 95.65 46 79.55 4e-19 pfam08879 WRC WRC. The WRC domain named after the conserved Trp-Arg-Cys motif contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that the WRC domain functions in DNA binding.
rpsblast_cdd gnl|CDD|204086 83 119 + 37 none 100.00 37 54.05 1e-08 pfam08880 QLQ QLQ. The QLQ domain is named after the conserved Gln Leu Gln motif. The QLQ domain is found at the N-terminus of SWI2/SNF2 protein which has been shown to be involved in protein-protein interactions. This domain has thus been postulated to be involved in mediating protein interactions.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 154 198 45 PS51667 none WRC domain profile. IPR014977
SMART 83 119 37 SM00951 none none IPR014978
PANTHER 1 387 387 PTHR31602:SF3 none none none
Pfam 83 119 37 PF08880 none QLQ IPR014978
PANTHER 1 387 387 PTHR31602 none none IPR031137
ProSiteProfiles 84 119 36 PS51666 none QLQ domain profile. IPR014978
Pfam 154 197 44 PF08879 none WRC IPR014977

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting