Protein : Qrob_P0087010.2 Q. robur
Protein Identifier  ? Qrob_P0087010.2 Organism . Name  Quercus robur
Score  94.1 Score Type  egn
Protein Description  (M=1) K04681 - retinoblastoma-like Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1100  
Kegg Orthology  K04681
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0051726 regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.
GO:0006357 regulation of transcription from RNA polymerase II promoter Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0007049 cell cycle The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1264670 9 1098 + 1090 Gaps:83 99.90 1020 80.96 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa000710mg 1 1098 + 1098 Gaps:85 99.90 1026 80.78 0.0 hypothetical protein
blastp_kegg lcl|pxb:103952095 1 1099 + 1099 Gaps:83 99.32 1035 79.28 0.0 retinoblastoma-related protein-like
blastp_kegg lcl|pop:POPTR_0001s06870g 1 1099 + 1099 Gaps:84 100.00 1035 78.16 0.0 POPTRDRAFT_547794 RETINOBLASTOMA-RELATED 1 family protein
blastp_kegg lcl|mdm:103438592 1 1099 + 1099 Gaps:83 100.00 1028 79.18 0.0 retinoblastoma-related protein
blastp_kegg lcl|pmum:103330806 1 1098 + 1098 Gaps:85 99.90 1026 80.00 0.0 retinoblastoma-related protein
blastp_kegg lcl|csv:101219810 9 1099 + 1091 Gaps:79 100.00 1024 77.25 0.0 retinoblastoma-related protein-like
blastp_kegg lcl|cmo:103489529 6 1099 + 1094 Gaps:85 100.00 1025 77.37 0.0 retinoblastoma-related protein
blastp_kegg lcl|cit:102611028 9 1098 + 1090 Gaps:81 99.90 1024 79.67 0.0 retinoblastoma-related protein-like
blastp_kegg lcl|mdm:103426968 1 1099 + 1099 Gaps:84 100.00 1027 79.65 0.0 retinoblastoma-related protein-like
blastp_pdb 1o9k_G 462 661 + 200 Gaps:23 91.28 218 33.67 2e-26 mol:protein length:218 RETINOBLASTOMA-ASSOCIATED PROTEIN
blastp_pdb 1o9k_E 462 661 + 200 Gaps:23 91.28 218 33.67 2e-26 mol:protein length:218 RETINOBLASTOMA-ASSOCIATED PROTEIN
blastp_pdb 1o9k_C 462 661 + 200 Gaps:23 91.28 218 33.67 2e-26 mol:protein length:218 RETINOBLASTOMA-ASSOCIATED PROTEIN
blastp_pdb 1o9k_A 462 661 + 200 Gaps:23 91.28 218 33.67 2e-26 mol:protein length:218 RETINOBLASTOMA-ASSOCIATED PROTEIN
blastp_pdb 1gux_A 462 661 + 200 Gaps:23 91.28 218 33.67 2e-26 mol:protein length:218 RETINOBLASTOMA PROTEIN
blastp_pdb 1gh6_B 468 947 + 480 Gaps:63 94.29 333 32.17 2e-22 mol:protein length:333 RETINOBLASTOMA-ASSOCIATED PROTEIN
blastp_pdb 1ad6_A 467 651 + 185 Gaps:23 99.46 185 33.15 3e-22 mol:protein length:185 RETINOBLASTOMA TUMOR SUPPRESSOR
blastp_pdb 2r7g_C 470 989 + 520 Gaps:84 95.97 347 32.13 7e-22 mol:protein length:347 Retinoblastoma-associated protein
blastp_pdb 2r7g_A 470 989 + 520 Gaps:84 95.97 347 32.13 7e-22 mol:protein length:347 Retinoblastoma-associated protein
blastp_pdb 3pom_B 470 989 + 520 Gaps:84 94.60 352 32.13 7e-22 mol:protein length:352 Retinoblastoma-associated protein
blastp_uniprot_sprot sp|B9SVG9|RBR_RICCO 9 1098 + 1090 Gaps:83 99.90 1020 80.96 0.0 Retinoblastoma-related protein OS Ricinus communis GN RBR PE 2 SV 1
blastp_uniprot_sprot sp|B9GLX8|RBR_POPTR 1 1099 + 1099 Gaps:84 100.00 1035 78.16 0.0 Retinoblastoma-related protein OS Populus trichocarpa GN RBL901 PE 3 SV 1
blastp_uniprot_sprot sp|A7P514|RBR_VITVI 36 1099 + 1064 Gaps:87 98.41 1007 80.02 0.0 Retinoblastoma-related protein OS Vitis vinifera GN RBR PE 2 SV 1
blastp_uniprot_sprot sp|Q2ABE5|RBR_CAMSI 9 1099 + 1091 Gaps:84 100.00 1025 75.71 0.0 Retinoblastoma-related protein OS Camellia sinensis GN pRB PE 2 SV 1
blastp_uniprot_sprot sp|A9UL14|RBR_MEDSA 1 1099 + 1099 Gaps:100 100.00 1025 75.02 0.0 Retinoblastoma-related protein OS Medicago sativa GN RBR PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLZ4|RBR1_PEA 1 1099 + 1099 Gaps:97 100.00 1026 75.44 0.0 Retinoblastoma-related protein 1 OS Pisum sativum GN RBR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q66WV0|RBR1_NICBE 21 1099 + 1079 Gaps:96 99.60 1003 73.37 0.0 Retinoblastoma-related protein 1 OS Nicotiana benthamiana GN RBR1 PE 2 SV 1
blastp_uniprot_sprot sp|B1ABR6|RBR_HIEPI 9 1095 + 1087 Gaps:102 100.00 1005 72.44 0.0 Retinoblastoma-related protein OS Hieracium piloselloides GN RBR PE 2 SV 1
blastp_uniprot_sprot sp|B1ABS0|RBR_HIEPL 9 1095 + 1087 Gaps:105 100.00 1008 71.83 0.0 Retinoblastoma-related protein OS Hieracium pilosella GN RBR PE 2 SV 1
blastp_uniprot_sprot sp|Q9LKZ3|RBR1_ARATH 35 1099 + 1065 Gaps:100 98.22 1013 73.07 0.0 Retinoblastoma-related protein 1 OS Arabidopsis thaliana GN RBR1 PE 1 SV 1

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 789 856 68 SSF47954 none none IPR013763
SUPERFAMILY 886 987 102 SSF47954 none none IPR013763
Phobius 274 1099 826 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 470 665 196 SSF47954 none none IPR013763
Pfam 462 663 202 PF01858 none Retinoblastoma-associated protein A domain IPR002720
PANTHER 9 121 113 PTHR13742:SF17 none none IPR015652
PANTHER 887 1062 176 PTHR13742:SF17 none none IPR015652
PANTHER 352 857 506 PTHR13742 none none IPR028309
Coils 297 325 29 Coil none none none
Pfam 884 948 65 PF01857 none Retinoblastoma-associated protein B domain IPR002719
Pfam 790 861 72 PF01857 none Retinoblastoma-associated protein B domain IPR002719
Phobius 1 252 252 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 150 334 185 PTHR13742:SF17 none none IPR015652
PANTHER 352 857 506 PTHR13742:SF17 none none IPR015652
PANTHER 9 121 113 PTHR13742 none none IPR028309
Gene3D 783 988 206 G3DSA:1.10.472.10 none none IPR013763
PANTHER 150 334 185 PTHR13742 none none IPR028309
PANTHER 887 1062 176 PTHR13742 none none IPR028309
Gene3D 470 653 184 G3DSA:1.10.472.10 none none IPR013763
Pfam 150 270 121 PF11934 none Domain of unknown function (DUF3452) IPR024599
Phobius 253 273 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting