Protein : Qrob_P0086920.2 Q. robur
Protein Identifier  ? Qrob_P0086920.2 Organism . Name  Quercus robur
Score  19.4 Score Type  egn
Protein Description  (M=27) PF02485 - Core-2/I-Branching enzyme Gene Prediction Quality  validated
Protein length 

Sequence

Length: 227  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0008375 acetylglucosaminyltransferase activity Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to a sugar.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1703960 1 220 + 220 none 60.27 365 81.82 7e-138 hypothetical protein
blastp_kegg lcl|cam:101506034 2 226 + 225 none 57.40 392 82.22 3e-137 uncharacterized LOC101506034
blastp_kegg lcl|gmx:100817202 1 226 + 226 none 57.51 393 81.42 3e-134 uncharacterized LOC100817202
blastp_kegg lcl|pper:PRUPE_ppa006891mg 1 226 + 226 none 57.80 391 78.76 5e-133 hypothetical protein
blastp_kegg lcl|mtr:MTR_4g127550 1 226 + 226 Gaps:1 57.32 396 80.62 9e-133 hypothetical protein
blastp_kegg lcl|fve:101315136 1 220 + 220 none 56.12 392 80.45 1e-132 uncharacterized protein LOC101315136
blastp_kegg lcl|tcc:TCM_039411 1 226 + 226 none 58.10 389 78.32 2e-132 Core-2/I-branching beta-1 6-N-acetylglucosaminyltransferase family protein
blastp_kegg lcl|gmx:100784132 2 226 + 225 none 57.25 393 80.44 2e-132 uncharacterized LOC100784132
blastp_kegg lcl|pxb:103938153 1 226 + 226 none 57.80 391 78.76 5e-132 uncharacterized LOC103938153
blastp_kegg lcl|mdm:103418072 1 226 + 226 none 57.80 391 78.76 5e-132 uncharacterized LOC103418072
rpsblast_cdd gnl|CDD|202252 78 220 + 143 Gaps:15 65.29 242 46.20 1e-43 pfam02485 Branch Core-2/I-Branching enzyme. This is a family of two different beta-1 6-N-acetylglucosaminyltransferase enzymes I-branching enzyme and core-2 branching enzyme . I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 3 14 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 78 221 144 PF02485 none Core-2/I-Branching enzyme IPR003406
Phobius 15 26 12 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 1 220 220 PTHR31042 none none none
Phobius 27 226 200 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 220 220 PTHR31042:SF1 none none none

2 Localization

Analysis Start End Length
TMHMM 2 21 19
SignalP_EUK 1 17 16

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Secretory pathway 1 0.954 0.028 NON-PLANT 26