Protein : Qrob_P0086770.2 Q. robur
Protein Identifier  ? Qrob_P0086770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR10381//PTHR10381:SF16 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT // SUBFAMILY NOT NAMED Code Enzyme  EC:3.4.21.92
Gene Prediction Quality  validated Protein length 

Sequence

Length: 193  
Kegg Orthology  K01358
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0004252 serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103496858 3 192 + 190 Gaps:1 55.75 339 82.01 3e-111 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic
blastp_kegg lcl|csv:101230441 3 192 + 190 Gaps:2 56.05 339 82.11 3e-109 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|vvi:100265683 3 192 + 190 Gaps:4 58.13 320 84.41 3e-109 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0326970 4 192 + 189 Gaps:1 56.29 334 81.38 1e-108 ATP-dependent Clp protease proteolytic subunit putative (EC:3.4.21.92)
blastp_kegg lcl|csv:101205927 5 192 + 188 Gaps:2 55.46 339 82.45 2e-108 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|gmx:100795295 4 192 + 189 Gaps:1 58.39 322 80.85 5e-108 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|pda:103704858 4 192 + 189 Gaps:1 55.95 336 79.79 2e-107 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|tcc:TCM_019287 3 191 + 189 Gaps:1 59.49 316 78.72 4e-106 ATP-dependent Clp protease proteolytic subunit 3
blastp_kegg lcl|gmx:100778609 4 192 + 189 Gaps:4 57.99 319 81.62 5e-106 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|pmum:103343663 1 192 + 192 Gaps:1 57.70 331 78.53 8e-106 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic
blastp_pdb 3sta_T 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_S 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_N 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_M 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_L 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_K 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_I 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_G 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_F 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_E 4 121 + 118 Gaps:1 59.39 197 58.12 3e-41 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_uniprot_sprot sp|Q9SXJ6|CLPP3_ARATH 1 170 + 170 Gaps:1 54.69 309 80.47 1e-98 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic OS Arabidopsis thaliana GN CLPP3 PE 1 SV 1
blastp_uniprot_sprot sp|A6VW20|CLPP_MARMS 4 121 + 118 Gaps:1 55.71 210 63.25 3e-45 ATP-dependent Clp protease proteolytic subunit OS Marinomonas sp. (strain MWYL1) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|Q8YXH5|CLPP1_NOSS1 4 127 + 124 Gaps:1 60.29 204 59.35 4e-45 ATP-dependent Clp protease proteolytic subunit 1 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN clpP1 PE 3 SV 1
blastp_uniprot_sprot sp|Q3MFR5|CLPP1_ANAVT 4 127 + 124 Gaps:1 60.29 204 58.54 8e-45 ATP-dependent Clp protease proteolytic subunit 1 OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN clpP1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8XYP7|CLPP_RALSO 1 121 + 121 Gaps:1 55.30 217 56.67 1e-44 ATP-dependent Clp protease proteolytic subunit OS Ralstonia solanacearum (strain GMI1000) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|B7GL34|CLPP_ANOFW 4 121 + 118 Gaps:1 59.69 196 61.54 2e-44 ATP-dependent Clp protease proteolytic subunit OS Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|A7GIH2|CLPP_CLOBL 4 125 + 122 Gaps:1 62.37 194 62.81 2e-44 ATP-dependent Clp protease proteolytic subunit OS Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|B1IND7|CLPP_CLOBK 4 125 + 122 Gaps:1 62.37 194 62.81 2e-44 ATP-dependent Clp protease proteolytic subunit OS Clostridium botulinum (strain Okra / Type B1) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|C1FLA6|CLPP_CLOBJ 4 125 + 122 Gaps:1 62.37 194 62.81 2e-44 ATP-dependent Clp protease proteolytic subunit OS Clostridium botulinum (strain Kyoto / Type A2) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|A5I6W1|CLPP_CLOBH 4 125 + 122 Gaps:1 62.37 194 62.81 2e-44 ATP-dependent Clp protease proteolytic subunit OS Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN clpP PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 99 118 20 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 41 60 20 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 20 37 18 PR00127 none Clp protease catalytic subunit P signature IPR001907
SUPERFAMILY 4 123 120 SSF52096 none none IPR029045
Phobius 1 17 17 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 4 123 120 G3DSA:3.90.226.10 none none IPR029045
ProSitePatterns 20 31 12 PS00381 none Endopeptidase Clp serine active site. IPR018215
Phobius 37 192 156 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 4 153 150 PTHR10381:SF16 none none none
PANTHER 4 153 150 PTHR10381 none none IPR023562
ProSitePatterns 42 55 14 PS00382 none Endopeptidase Clp histidine active site. IPR018215
Pfam 3 122 120 PF00574 none Clp protease IPR023562
Phobius 18 36 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 21 38 17

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting