Protein : Qrob_P0086760.2 Q. robur
Protein Identifier  ? Qrob_P0086760.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR10381//PTHR10381:SF16 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT // SUBFAMILY NOT NAMED Code Enzyme  EC:3.4.21.92
Gene Prediction Quality  validated Protein length 

Sequence

Length: 177  
Kegg Orthology  K01358
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0004252 serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100778609 1 147 + 147 Gaps:17 42.01 319 67.91 5e-48 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|gmx:100795295 1 147 + 147 Gaps:17 41.61 322 67.91 6e-48 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa008442mg 7 147 + 141 Gaps:7 42.90 331 64.79 1e-46 hypothetical protein
blastp_kegg lcl|vvi:100265683 1 147 + 147 Gaps:12 42.19 320 62.22 3e-44 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_008G010000g 1 147 + 147 Gaps:17 43.37 309 66.42 5e-44 hypothetical protein
blastp_kegg lcl|mdm:103407329 7 155 + 149 Gaps:20 98.10 158 58.71 9e-44 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|pxb:103952115 7 147 + 141 Gaps:12 43.35 316 64.96 9e-44 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|pxb:103942910 25 147 + 123 Gaps:10 57.47 221 66.14 2e-43 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic-like
blastp_kegg lcl|pmum:103343663 7 147 + 141 Gaps:5 42.90 331 61.97 2e-43 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic
blastp_kegg lcl|rcu:RCOM_0326970 1 147 + 147 Gaps:15 43.71 334 61.64 2e-42 ATP-dependent Clp protease proteolytic subunit putative (EC:3.4.21.92)
blastp_pdb 3sta_T 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_S 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_N 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_M 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_L 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_K 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_I 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_G 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_F 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 3sta_E 93 147 + 55 none 27.92 197 61.82 6e-16 mol:protein length:197 ATP-dependent Clp protease proteolytic subuni
blastp_uniprot_sprot sp|Q9SXJ6|CLPP3_ARATH 1 147 + 147 Gaps:18 44.98 309 60.43 2e-37 ATP-dependent Clp protease proteolytic subunit 3 chloroplastic OS Arabidopsis thaliana GN CLPP3 PE 1 SV 1
blastp_uniprot_sprot sp|Q94B60|CLPP4_ARATH 88 147 + 60 none 20.55 292 65.00 9e-19 ATP-dependent Clp protease proteolytic subunit 4 chloroplastic OS Arabidopsis thaliana GN CLPP4 PE 1 SV 1
blastp_uniprot_sprot sp|Q5N1P6|CLPP3_SYNP6 25 147 + 123 Gaps:20 42.92 240 46.60 4e-17 ATP-dependent Clp protease proteolytic subunit 3 OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN clpP3 PE 3 SV 1
blastp_uniprot_sprot sp|O34125|CLPP2_SYNE7 25 147 + 123 Gaps:20 42.92 240 46.60 4e-17 ATP-dependent Clp protease proteolytic subunit 2 OS Synechococcus elongatus (strain PCC 7942) GN clpP2 PE 3 SV 1
blastp_uniprot_sprot sp|Q59993|CLPP2_SYNY3 92 147 + 56 none 24.78 226 62.50 5e-17 ATP-dependent Clp protease proteolytic subunit 2 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN clpP2 PE 3 SV 1
blastp_uniprot_sprot sp|Q47MU2|CLPP2_THEFY 77 147 + 71 Gaps:2 33.99 203 53.62 5e-17 ATP-dependent Clp protease proteolytic subunit 2 OS Thermobifida fusca (strain YX) GN clpP2 PE 3 SV 1
blastp_uniprot_sprot sp|Q3MFR5|CLPP1_ANAVT 92 147 + 56 none 27.45 204 64.29 6e-17 ATP-dependent Clp protease proteolytic subunit 1 OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN clpP1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8YXH5|CLPP1_NOSS1 92 147 + 56 none 27.45 204 64.29 7e-17 ATP-dependent Clp protease proteolytic subunit 1 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN clpP1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8YQX8|CLPP2_NOSS1 92 147 + 56 none 24.14 232 60.71 1e-16 ATP-dependent Clp protease proteolytic subunit 2 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN clpP2 PE 3 SV 1
blastp_uniprot_sprot sp|Q3M726|CLPP3_ANAVT 92 147 + 56 none 26.17 214 60.71 1e-16 ATP-dependent Clp protease proteolytic subunit 3 OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN clpP3 PE 3 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 133 153 21 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 93 108 16 PR00127 none Clp protease catalytic subunit P signature IPR001907
PANTHER 35 147 113 PTHR10381 none none IPR023562
PANTHER 35 147 113 PTHR10381:SF16 none none none
Phobius 17 176 160 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 91 151 61 G3DSA:3.90.226.10 none none IPR029045
Pfam 92 149 58 PF00574 none Clp protease IPR023562
Phobius 12 16 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 91 151 61 SSF52096 none none IPR029045
Phobius 1 16 16 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 4 11 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting