Protein : Qrob_P0086440.2 Q. robur
Protein Identifier  ? Qrob_P0086440.2 Organism . Name  Quercus robur
Score  50.0 Score Type  egn
Protein Description  (M=2) KOG1052//KOG1053//KOG4440 - Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 334  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101308388 3 333 + 331 Gaps:7 94.77 344 57.98 3e-126 glutamate receptor 3.1-like
blastp_kegg lcl|pop:POPTR_0004s05170g 1 332 + 332 Gaps:3 42.47 784 62.46 2e-125 POPTRDRAFT_758820 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s05180g 1 332 + 332 Gaps:3 35.77 931 59.16 6e-115 POPTRDRAFT_817827 hypothetical protein
blastp_kegg lcl|gmx:100817551 1 283 + 283 Gaps:4 30.99 926 57.49 6e-109 glutamate receptor 2.7-like
blastp_kegg lcl|cic:CICLE_v10018204mg 1 325 + 325 Gaps:7 36.55 892 58.59 3e-108 hypothetical protein
blastp_kegg lcl|tcc:TCM_029764 1 332 + 332 Gaps:5 30.15 1111 58.21 9e-107 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_kegg lcl|fve:101298055 1 295 + 295 Gaps:3 86.73 339 55.10 1e-104 glutamate receptor 3.2-like
blastp_kegg lcl|rcu:RCOM_1012900 1 260 + 260 Gaps:1 30.96 843 65.13 2e-104 glutamate receptor 2 plant putative
blastp_kegg lcl|tcc:TCM_029763 1 308 + 308 Gaps:6 33.73 919 59.68 8e-104 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_kegg lcl|gmx:100818078 1 321 + 321 Gaps:11 35.51 918 53.68 5e-103 glutamate receptor 2.7-like
blastp_pdb 3kg2_D 1 261 + 261 Gaps:49 35.48 823 27.05 1e-10 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 1 261 + 261 Gaps:49 35.48 823 27.05 1e-10 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 1 261 + 261 Gaps:49 35.48 823 27.05 1e-10 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 1 261 + 261 Gaps:49 35.48 823 27.05 1e-10 mol:protein length:823 Glutamate receptor 2
blastp_uniprot_sprot sp|Q7XJL2|GLR31_ARATH 4 255 + 252 Gaps:5 27.47 921 41.11 3e-59 Glutamate receptor 3.1 OS Arabidopsis thaliana GN GLR3.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q93YT1|GLR32_ARATH 3 258 + 256 Gaps:10 28.73 912 40.46 8e-58 Glutamate receptor 3.2 OS Arabidopsis thaliana GN GLR3.2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 3 254 + 252 Gaps:7 26.80 959 40.86 6e-54 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 3 250 + 248 Gaps:7 26.90 933 39.84 1e-53 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 3 262 + 260 Gaps:8 29.24 903 35.98 5e-52 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SW97|GLR35_ARATH 3 254 + 252 Gaps:7 26.97 953 41.25 8e-48 Glutamate receptor 3.5 OS Arabidopsis thaliana GN GLR3.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 3 257 + 255 Gaps:9 28.10 918 39.92 1e-47 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 3 266 + 264 Gaps:9 27.61 967 38.95 2e-46 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SDQ4|GLR37_ARATH 3 252 + 250 Gaps:7 27.69 921 35.69 2e-45 Glutamate receptor 3.7 OS Arabidopsis thaliana GN GLR3.7 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C5V5|GLR28_ARATH 3 295 + 293 Gaps:8 30.31 947 36.59 3e-45 Glutamate receptor 2.8 OS Arabidopsis thaliana GN GLR2.8 PE 2 SV 2
rpsblast_cdd gnl|CDD|189368 3 235 + 233 Gaps:18 93.66 268 29.48 2e-41 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
rpsblast_cdd gnl|CDD|197504 80 205 + 126 Gaps:9 100.00 133 26.32 1e-13 smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb.
rpsblast_kog gnl|CDD|36270 3 254 + 252 Gaps:21 40.40 656 29.06 2e-33 KOG1052 KOG1052 KOG1052 Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36271 47 246 + 200 Gaps:43 16.45 1258 25.12 6e-10 KOG1053 KOG1053 KOG1053 Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|39641 25 273 + 249 Gaps:28 26.08 993 22.01 4e-09 KOG4440 KOG4440 KOG4440 NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 226 246 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 38 48 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 61 208 148 SSF53850 none none none
PANTHER 3 260 258 PTHR18966 none none none
Phobius 247 333 87 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 10 115 106 G3DSA:1.10.287.70 none none none
Pfam 62 204 143 PF00497 none Bacterial extracellular solute-binding proteins, family 3 none
Phobius 49 67 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 2 205 204 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
Pfam 3 234 232 PF00060 none Ligand-gated ion channel IPR001320
Gene3D 169 209 41 G3DSA:3.40.190.10 none none none
Phobius 1 20 20 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 68 225 158 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 3 260 258 PTHR18966:SF6 none none none
Phobius 21 37 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

2 Localization

Analysis Start End Length
TMHMM 51 73 22
TMHMM 227 249 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting