Protein : Qrob_P0086240.2 Q. robur
Protein Identifier  ? Qrob_P0086240.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=5) K02941 - large subunit ribosomal protein LP0 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 297  
Kegg Orthology  K02941
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100250067 2 296 + 295 Gaps:12 94.69 320 85.81 1e-165 60S acidic ribosomal protein P0-like
blastp_kegg lcl|csv:101214032 2 296 + 295 Gaps:12 94.69 320 82.18 4e-162 60S acidic ribosomal protein P0-like
blastp_kegg lcl|cmo:103501429 2 296 + 295 Gaps:12 94.69 320 82.18 1e-158 60S acidic ribosomal protein P0
blastp_kegg lcl|pop:POPTR_0008s06620g 2 296 + 295 Gaps:10 94.72 322 81.97 7e-158 POPTRDRAFT_832583 60S acidic ribosomal protein P0-A
blastp_kegg lcl|vvi:100254737 2 296 + 295 Gaps:12 94.69 320 83.83 4e-157 60S acidic ribosomal protein P0-like
blastp_kegg lcl|cam:101504382 2 296 + 295 Gaps:10 94.72 322 83.61 6e-157 60S acidic ribosomal protein P0-like
blastp_kegg lcl|tcc:TCM_042569 2 296 + 295 Gaps:12 94.69 320 83.83 2e-156 Ribosomal protein L10 family protein isoform 1
blastp_kegg lcl|rcu:RCOM_0592410 2 296 + 295 Gaps:12 94.69 320 83.17 2e-156 60S acidic ribosomal protein P0 putative (EC:4.2.99.18)
blastp_kegg lcl|gmx:100791968 2 296 + 295 Gaps:12 94.69 320 76.57 2e-156 60S acidic ribosomal protein P0-like
blastp_kegg lcl|mus:103984125 2 296 + 295 Gaps:13 94.67 319 79.80 2e-156 60S acidic ribosomal protein P0-like
blastp_pdb 3izr_s 2 296 + 295 Gaps:13 94.67 319 75.83 4e-148 mol:protein length:319 60S acidic ribosomal protein P0 (L10p)
blastp_pdb 2zkr_g 2 296 + 295 Gaps:14 94.95 317 53.16 4e-83 mol:protein length:317 60S acidic ribosomal protein P0
blastp_pdb 3j16_G 2 296 + 295 Gaps:17 95.51 312 45.97 4e-66 mol:protein length:312 60S ribosomal protein L10
blastp_pdb 3izs_s 2 296 + 295 Gaps:17 95.51 312 45.97 4e-66 mol:protein length:312 60S acidic ribosomal protein rpP0 (L10P)
blastp_pdb 3o5h_M 2 296 + 295 Gaps:17 95.51 312 45.64 7e-65 mol:protein length:312 60S acidic ribosomal protein P0
blastp_pdb 3u5i_q 2 296 + 295 Gaps:17 95.51 312 42.95 1e-54 mol:protein length:312 60S acidic ribosomal protein P0
blastp_pdb 3i56_G 2 238 + 237 Gaps:16 69.83 348 25.93 7e-23 mol:protein length:348 50S ribosomal protein L10E
blastp_pdb 3i55_G 2 238 + 237 Gaps:16 69.83 348 25.93 7e-23 mol:protein length:348 50S ribosomal protein L10E
blastp_pdb 3g71_G 2 238 + 237 Gaps:16 69.83 348 25.93 7e-23 mol:protein length:348 50S ribosomal protein L10E
blastp_pdb 3g6e_G 2 238 + 237 Gaps:16 69.83 348 25.93 7e-23 mol:protein length:348 50S ribosomal protein L10E
blastp_uniprot_sprot sp|O04204|RLA01_ARATH 2 295 + 294 Gaps:15 94.32 317 79.93 1e-157 60S acidic ribosomal protein P0-1 OS Arabidopsis thaliana GN RPP0A PE 1 SV 1
blastp_uniprot_sprot sp|P50346|RLA0_SOYBN 2 296 + 295 Gaps:12 94.69 320 82.84 5e-155 60S acidic ribosomal protein P0 OS Glycine max PE 1 SV 1
blastp_uniprot_sprot sp|Q42112|RLA02_ARATH 2 252 + 251 Gaps:10 81.56 320 82.38 9e-152 60S acidic ribosomal protein P0-2 OS Arabidopsis thaliana GN RPP0B PE 1 SV 2
blastp_uniprot_sprot sp|P57691|RLA03_ARATH 2 252 + 251 Gaps:10 80.80 323 81.23 1e-149 60S acidic ribosomal protein P0-3 OS Arabidopsis thaliana GN RPP0C PE 1 SV 1
blastp_uniprot_sprot sp|P41095|RLA0_ORYSJ 2 296 + 295 Gaps:13 94.67 319 75.83 1e-147 60S acidic ribosomal protein P0 OS Oryza sativa subsp. japonica GN Os08g0130500 PE 1 SV 3
blastp_uniprot_sprot sp|P50345|RLA0_LUPLU 2 296 + 295 Gaps:11 94.41 322 75.99 2e-138 60S acidic ribosomal protein P0 OS Lupinus luteus PE 2 SV 1
blastp_uniprot_sprot sp|O24573|RLA0_MAIZE 2 296 + 295 Gaps:14 94.36 319 72.76 8e-132 60S acidic ribosomal protein P0 OS Zea mays GN RP-P0 PE 1 SV 3
blastp_uniprot_sprot sp|P29764|RLA0_OXYRB 2 296 + 295 Gaps:14 94.39 321 66.01 4e-117 60S acidic ribosomal protein P0 OS Oxybasis rubra PE 2 SV 1
blastp_uniprot_sprot sp|Q9U3U0|RLA0_CERCA 2 296 + 295 Gaps:14 94.95 317 53.49 2e-89 60S acidic ribosomal protein P0 OS Ceratitis capitata GN RpLP0 PE 3 SV 1
blastp_uniprot_sprot sp|Q9DG68|RLA0_RANSY 2 252 + 251 Gaps:12 82.22 315 53.67 7e-88 60S acidic ribosomal protein P0 OS Rana sylvatica GN RPLP0 PE 2 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 249 296 48 PTHR21141:SF3 none none none
Pfam 3 92 90 PF00466 none Ribosomal protein L10 IPR001790
Pfam 208 295 88 PF00428 none 60s Acidic ribosomal protein none
PANTHER 249 296 48 PTHR21141 none none none
PANTHER 2 225 224 PTHR21141 none none none
PANTHER 2 225 224 PTHR21141:SF3 none none none
SUPERFAMILY 4 117 114 SSF160369 none none none
PIRSF 1 296 296 PIRSF039087 none none IPR030670

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting