Protein : Qrob_P0086210.2 Q. robur
Protein Identifier  ? Qrob_P0086210.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) K02941 - large subunit ribosomal protein LP0 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 323  
Kegg Orthology  K02941
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100250067 1 322 + 322 Gaps:2 100.00 320 90.62 0.0 60S acidic ribosomal protein P0-like
blastp_kegg lcl|csv:101214032 1 322 + 322 Gaps:2 100.00 320 86.25 0.0 60S acidic ribosomal protein P0-like
blastp_kegg lcl|vvi:100254737 1 322 + 322 Gaps:2 100.00 320 89.38 0.0 60S acidic ribosomal protein P0-like
blastp_kegg lcl|rcu:RCOM_0592410 1 322 + 322 Gaps:2 100.00 320 88.75 0.0 60S acidic ribosomal protein P0 putative (EC:4.2.99.18)
blastp_kegg lcl|pop:POPTR_0008s06620g 1 322 + 322 none 100.00 322 87.58 0.0 POPTRDRAFT_832583 60S acidic ribosomal protein P0-A
blastp_kegg lcl|tcc:TCM_042569 1 322 + 322 Gaps:2 100.00 320 88.75 0.0 Ribosomal protein L10 family protein isoform 1
blastp_kegg lcl|pop:POPTR_0010s19860g 1 322 + 322 Gaps:2 100.00 320 90.31 0.0 POPTRDRAFT_822404 60S acidic ribosomal protein P0-A
blastp_kegg lcl|pmum:103322562 1 322 + 322 Gaps:4 99.69 319 89.31 0.0 60S acidic ribosomal protein P0
blastp_kegg lcl|pper:PRUPE_ppa008800mg 1 322 + 322 Gaps:4 99.69 319 89.31 0.0 hypothetical protein
blastp_kegg lcl|cmo:103501429 1 322 + 322 Gaps:2 100.00 320 86.25 0.0 60S acidic ribosomal protein P0
blastp_pdb 3izr_s 1 322 + 322 Gaps:3 100.00 319 79.31 5e-170 mol:protein length:319 60S acidic ribosomal protein P0 (L10p)
blastp_pdb 2zkr_g 4 322 + 319 Gaps:4 99.37 317 55.24 1e-96 mol:protein length:317 60S acidic ribosomal protein P0
blastp_pdb 3j16_G 9 322 + 314 Gaps:7 98.40 312 48.86 3e-80 mol:protein length:312 60S ribosomal protein L10
blastp_pdb 3izs_s 9 322 + 314 Gaps:7 98.40 312 48.86 3e-80 mol:protein length:312 60S acidic ribosomal protein rpP0 (L10P)
blastp_pdb 3o5h_M 9 322 + 314 Gaps:7 98.40 312 48.53 5e-79 mol:protein length:312 60S acidic ribosomal protein P0
blastp_pdb 3u5i_q 9 322 + 314 Gaps:7 98.40 312 45.93 4e-68 mol:protein length:312 60S acidic ribosomal protein P0
blastp_pdb 3i56_G 18 264 + 247 Gaps:6 69.83 348 27.98 2e-28 mol:protein length:348 50S ribosomal protein L10E
blastp_pdb 3i55_G 18 264 + 247 Gaps:6 69.83 348 27.98 2e-28 mol:protein length:348 50S ribosomal protein L10E
blastp_pdb 3g71_G 18 264 + 247 Gaps:6 69.83 348 27.98 2e-28 mol:protein length:348 50S ribosomal protein L10E
blastp_pdb 3g6e_G 18 264 + 247 Gaps:6 69.83 348 27.98 2e-28 mol:protein length:348 50S ribosomal protein L10E
blastp_uniprot_sprot sp|P50346|RLA0_SOYBN 1 322 + 322 Gaps:2 100.00 320 88.44 0.0 60S acidic ribosomal protein P0 OS Glycine max PE 1 SV 1
blastp_uniprot_sprot sp|O04204|RLA01_ARATH 1 321 + 321 Gaps:5 99.68 317 84.49 0.0 60S acidic ribosomal protein P0-1 OS Arabidopsis thaliana GN RPP0A PE 1 SV 1
blastp_uniprot_sprot sp|Q42112|RLA02_ARATH 4 278 + 275 none 85.94 320 88.36 5e-178 60S acidic ribosomal protein P0-2 OS Arabidopsis thaliana GN RPP0B PE 1 SV 2
blastp_uniprot_sprot sp|P57691|RLA03_ARATH 4 322 + 319 none 98.76 323 81.82 2e-176 60S acidic ribosomal protein P0-3 OS Arabidopsis thaliana GN RPP0C PE 1 SV 1
blastp_uniprot_sprot sp|P41095|RLA0_ORYSJ 1 322 + 322 Gaps:3 100.00 319 79.31 2e-169 60S acidic ribosomal protein P0 OS Oryza sativa subsp. japonica GN Os08g0130500 PE 1 SV 3
blastp_uniprot_sprot sp|P50345|RLA0_LUPLU 1 322 + 322 Gaps:1 99.69 322 80.69 1e-161 60S acidic ribosomal protein P0 OS Lupinus luteus PE 2 SV 1
blastp_uniprot_sprot sp|O24573|RLA0_MAIZE 1 322 + 322 Gaps:4 99.69 319 77.67 7e-156 60S acidic ribosomal protein P0 OS Zea mays GN RP-P0 PE 1 SV 3
blastp_uniprot_sprot sp|P29764|RLA0_OXYRB 1 322 + 322 Gaps:4 99.69 321 70.94 2e-143 60S acidic ribosomal protein P0 OS Oxybasis rubra PE 2 SV 1
blastp_uniprot_sprot sp|Q9U3U0|RLA0_CERCA 4 322 + 319 Gaps:4 99.37 317 58.10 7e-108 60S acidic ribosomal protein P0 OS Ceratitis capitata GN RpLP0 PE 3 SV 1
blastp_uniprot_sprot sp|P19889|RLA0_DROME 4 278 + 275 Gaps:2 86.12 317 56.41 5e-104 60S acidic ribosomal protein P0 OS Drosophila melanogaster GN RpLP0 PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 275 322 48 PTHR21141 none none none
Pfam 234 321 88 PF00428 none 60s Acidic ribosomal protein none
SUPERFAMILY 8 134 127 SSF160369 none none none
PANTHER 1 251 251 PTHR21141:SF3 none none none
Pfam 7 108 102 PF00466 none Ribosomal protein L10 IPR001790
PANTHER 1 251 251 PTHR21141 none none none
PANTHER 275 322 48 PTHR21141:SF3 none none none
PIRSF 1 322 322 PIRSF039087 none none IPR030670

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting