Protein : Qrob_P0085650.2 Q. robur
Protein Identifier  ? Qrob_P0085650.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K11279 - nucleosome assembly protein 1-like 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 376  
Kegg Orthology  K11279
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006334 nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100267878 1 375 + 375 Gaps:17 100.00 368 78.26 6e-180 nucleosome assembly protein 1-like 1-like
blastp_kegg lcl|fve:101309068 1 375 + 375 Gaps:10 100.00 377 76.92 3e-175 nucleosome assembly protein 1-like 1-like
blastp_kegg lcl|pper:PRUPE_ppa006998mg 1 375 + 375 Gaps:13 100.00 386 76.17 5e-174 hypothetical protein
blastp_kegg lcl|pmum:103327692 12 375 + 364 Gaps:13 100.00 375 76.80 2e-167 nucleosome assembly protein 1 2
blastp_kegg lcl|pda:103712836 1 375 + 375 Gaps:9 100.00 378 74.87 4e-166 nucleosome assembly protein 1 2-like
blastp_kegg lcl|pda:103720242 1 375 + 375 Gaps:10 100.00 383 71.80 9e-166 nucleosome assembly protein 1 2-like
blastp_kegg lcl|vvi:100261732 1 375 + 375 Gaps:6 100.00 381 75.85 1e-165 nucleosome assembly protein 1-like 1-like
blastp_kegg lcl|mus:103986613 3 375 + 373 Gaps:14 98.94 379 73.07 3e-162 nucleosome assembly protein 1 1-like
blastp_kegg lcl|mdm:103453570 1 375 + 375 Gaps:18 100.00 377 67.90 1e-160 NAP nucleosome assembly protein 1 1
blastp_kegg lcl|pper:PRUPE_ppa007328mg 1 375 + 375 Gaps:19 100.00 366 75.41 9e-159 hypothetical protein
blastp_pdb 3gyw_A 60 298 + 239 Gaps:25 93.98 249 38.46 7e-41 mol:protein length:249 Nucleosome assembly protein 1 putative
blastp_pdb 3gyv_A 60 298 + 239 Gaps:25 93.98 249 38.46 7e-41 mol:protein length:249 Nucleosome assembly protein 1 putative
blastp_pdb 3hfd_A 60 314 + 255 Gaps:26 90.22 276 38.15 2e-40 mol:protein length:276 Nucleosome assembly protein 1
blastp_pdb 3fs3_A 60 304 + 245 Gaps:25 66.85 359 37.50 2e-40 mol:protein length:359 Nucleosome assembly protein 1 putative
blastp_pdb 2z2r_B 35 301 + 267 Gaps:37 100.00 292 34.59 1e-35 mol:protein length:292 Nucleosome assembly protein
blastp_pdb 2z2r_A 35 301 + 267 Gaps:37 100.00 292 34.59 1e-35 mol:protein length:292 Nucleosome assembly protein
blastp_pdb 2ayu_A 33 298 + 266 Gaps:37 69.78 417 34.71 2e-35 mol:protein length:417 Nucleosome assembly protein
blastp_pdb 2e50_Q 17 296 + 280 Gaps:62 97.78 225 34.09 2e-23 mol:protein length:225 Protein SET
blastp_pdb 2e50_P 17 296 + 280 Gaps:62 97.78 225 34.09 2e-23 mol:protein length:225 Protein SET
blastp_pdb 2e50_B 17 296 + 280 Gaps:62 97.78 225 34.09 2e-23 mol:protein length:225 Protein SET
blastp_uniprot_sprot sp|B8AW64|NAP1B_ORYSI 1 375 + 375 Gaps:21 100.00 364 73.08 5e-158 Nucleosome assembly protein 1 2 OS Oryza sativa subsp. indica GN NAP1 2 PE 1 SV 1
blastp_uniprot_sprot sp|Q53WK4|NAP1B_ORYSJ 1 375 + 375 Gaps:21 100.00 364 72.80 9e-158 Nucleosome assembly protein 1 2 OS Oryza sativa subsp. japonica GN NAP1 2 PE 2 SV 1
blastp_uniprot_sprot sp|Q70Z18|NAP1B_TOBAC 1 375 + 375 Gaps:16 100.00 377 71.62 5e-153 Nucleosome assembly protein 1 2 OS Nicotiana tabacum GN NAP1 2 PE 1 SV 1
blastp_uniprot_sprot sp|Q70Z17|NAP1C_TOBAC 1 375 + 375 Gaps:16 100.00 377 72.68 2e-150 Nucleosome assembly protein 1 3 OS Nicotiana tabacum GN NAP1 3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZUP3|NAP1B_ARATH 1 375 + 375 Gaps:18 100.00 379 69.13 3e-148 Nucleosome assembly protein 1 2 OS Arabidopsis thaliana GN NAP1 2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5VND6|NAP1A_ORYSJ 1 302 + 302 Gaps:6 81.48 378 78.90 2e-144 Nucleosome assembly protein 1 1 OS Oryza sativa subsp. japonica GN NAP1 1 PE 2 SV 1
blastp_uniprot_sprot sp|B8B2R4|NAP1A_ORYSI 1 302 + 302 Gaps:6 81.70 377 78.90 6e-144 Nucleosome assembly protein 1 1 OS Oryza sativa subsp. indica GN NAP1 1 PE 1 SV 1
blastp_uniprot_sprot sp|Q70Z19|NAP1A_TOBAC 1 375 + 375 Gaps:13 100.00 374 67.65 1e-141 Nucleosome assembly protein 1 1 OS Nicotiana tabacum GN NAP1 1 PE 1 SV 1
blastp_uniprot_sprot sp|Q94K07|NAP1C_ARATH 1 375 + 375 Gaps:13 100.00 374 66.84 8e-141 Nucleosome assembly protein 1 3 OS Arabidopsis thaliana GN NAP1 3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SZI2|NAP1A_ARATH 1 375 + 375 Gaps:17 100.00 372 65.86 6e-138 Nucleosome assembly protein 1 1 OS Arabidopsis thaliana GN NAP1 1 PE 1 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 33 335 303 PTHR11875 none none IPR002164
PANTHER 361 375 15 PTHR11875 none none IPR002164
PANTHER 33 335 303 PTHR11875:SF7 none none none
SUPERFAMILY 33 298 266 SSF143113 none none none
PANTHER 361 375 15 PTHR11875:SF7 none none none
Coils 53 81 29 Coil none none none
Pfam 54 300 247 PF00956 none Nucleosome assembly protein (NAP) IPR002164

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting