Protein : Qrob_P0085060.2 Q. robur
Protein Identifier  ? Qrob_P0085060.2 Organism . Name  Quercus robur
Score  93.1 Score Type  egn
Protein Description  (M=34) K05391 - cyclic nucleotide gated channel, other eukaryote Gene Prediction Quality  validated
Protein length 

Sequence

Length: 376  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|ath:AT5G53130 32 366 + 335 Gaps:3 47.21 716 51.18 1e-107 CNGC1 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|sot:102583090 41 370 + 330 Gaps:2 46.89 708 50.30 2e-107 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|sly:101250084 41 370 + 330 Gaps:2 46.89 708 50.30 8e-107 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|brp:103852055 32 366 + 335 Gaps:3 47.54 711 50.89 1e-106 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|aly:ARALYDRAFT_918383 32 366 + 335 Gaps:3 47.21 716 50.30 2e-106 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10012801mg 32 366 + 335 Gaps:7 47.57 719 49.12 1e-105 hypothetical protein
blastp_kegg lcl|sly:101257475 41 366 + 326 Gaps:2 46.33 708 51.22 2e-105 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|crb:CARUB_v10025973mg 32 366 + 335 Gaps:5 47.21 716 50.59 4e-105 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1579800 9 366 + 358 Gaps:6 42.48 838 49.44 5e-105 Cyclic nucleotide-gated ion channel putative
blastp_kegg lcl|tcc:TCM_015364 41 366 + 326 Gaps:2 46.00 713 50.30 1e-104 Cyclic nucleotide gated channel 1 isoform 1
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 32 366 + 335 Gaps:3 47.21 716 51.18 5e-109 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 45 362 + 318 Gaps:6 45.89 706 42.28 5e-82 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 37 362 + 326 Gaps:12 46.69 711 41.27 1e-81 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 26 362 + 337 Gaps:14 49.28 696 40.82 4e-78 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 41 370 + 330 Gaps:21 46.52 733 37.83 7e-70 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 41 370 + 330 Gaps:12 45.78 747 36.84 5e-69 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 41 370 + 330 Gaps:11 47.56 717 37.54 1e-66 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKD6|CNG11_ARATH 51 362 + 312 Gaps:13 51.37 621 38.24 7e-66 Cyclic nucleotide-gated ion channel 11 OS Arabidopsis thaliana GN CNGC11 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 41 370 + 330 Gaps:14 45.42 753 35.96 2e-64 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q8GWD2|CNG12_ARATH 51 362 + 312 Gaps:13 49.15 649 37.93 5e-64 Probable cyclic nucleotide-gated ion channel 12 OS Arabidopsis thaliana GN CNGC12 PE 2 SV 2
rpsblast_kog gnl|CDD|35719 5 366 + 362 Gaps:42 44.02 727 31.25 1e-59 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 115 148 34 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 149 168 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 100 360 261 PF00520 none Ion transport protein IPR005821
Phobius 82 92 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 32 250 219 PTHR10217:SF465 none none none
PANTHER 294 362 69 PTHR10217:SF465 none none none
SUPERFAMILY 306 362 57 SSF81324 none none none
SUPERFAMILY 48 246 199 SSF81324 none none none
PANTHER 294 362 69 PTHR10217 none none none
Phobius 201 220 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 242 335 94 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 32 250 219 PTHR10217 none none none
Phobius 336 358 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 58 81 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 221 241 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 359 375 17 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 57 245 189 G3DSA:1.10.287.70 none none none
Gene3D 306 362 57 G3DSA:1.10.287.70 none none none
Phobius 169 179 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 180 200 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 57 57 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 93 114 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

5 Localization

Analysis Start End Length
TMHMM 92 114 22
TMHMM 145 167 22
TMHMM 220 242 22
TMHMM 336 358 22
TMHMM 55 77 22

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting