Protein : Qrob_P0084870.2 Q. robur
Protein Identifier  ? Qrob_P0084870.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=34) K05391 - cyclic nucleotide gated channel, other eukaryote Gene Prediction Quality  validated
Protein length 

Sequence

Length: 588  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015364 27 563 + 537 Gaps:57 77.70 713 44.22 6e-148 Cyclic nucleotide gated channel 1 isoform 1
blastp_kegg lcl|pop:POPTR_0012s01690g 24 582 + 559 Gaps:70 82.79 709 43.78 2e-147 POPTRDRAFT_569505 cyclic nucleotide-gated channel C family protein
blastp_kegg lcl|brp:103852055 23 565 + 543 Gaps:58 78.90 711 44.03 2e-147 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|mdm:103417879 20 565 + 546 Gaps:62 79.66 713 43.31 2e-146 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|mdm:103443609 20 565 + 546 Gaps:62 79.66 713 43.31 2e-146 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pxb:103943447 20 565 + 546 Gaps:62 79.66 713 43.49 3e-146 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pmum:103319382 29 575 + 547 Gaps:73 84.99 673 46.33 5e-146 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|sly:101250084 22 565 + 544 Gaps:59 79.24 708 43.49 8e-145 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pvu:PHAVU_009G054700g 26 563 + 538 Gaps:61 77.90 715 44.34 1e-144 hypothetical protein
blastp_kegg lcl|cmo:103482956 12 566 + 555 Gaps:72 79.07 712 44.76 2e-144 cyclic nucleotide-gated ion channel 1
blastp_pdb 1wgp_A 452 547 + 96 Gaps:32 84.67 137 37.93 1e-13 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 23 563 + 541 Gaps:58 78.07 716 43.65 9e-146 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 16 565 + 550 Gaps:68 82.18 696 38.11 2e-118 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 23 551 + 529 Gaps:54 76.09 711 38.08 2e-114 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 30 565 + 536 Gaps:63 78.61 706 37.66 1e-108 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 26 580 + 555 Gaps:80 79.26 733 34.77 2e-103 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 26 571 + 546 Gaps:64 74.16 747 34.48 8e-100 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 26 563 + 538 Gaps:68 78.66 717 35.46 6e-99 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 27 565 + 539 Gaps:73 75.17 753 34.81 8e-96 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 27 571 + 545 Gaps:75 75.07 738 36.10 6e-94 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 28 568 + 541 Gaps:69 82.60 678 33.75 4e-88 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1
rpsblast_kog gnl|CDD|35719 21 563 + 543 Gaps:106 68.09 727 32.73 2e-81 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 189 207 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 168 188 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 68 78 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 368 539 172 SSF51206 none none IPR018490
Phobius 228 323 96 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 79 100 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 418 481 64 G3DSA:2.60.120.10 none none IPR014710
Pfam 86 348 263 PF00520 none Ion transport protein IPR005821
Phobius 208 227 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 282 349 68 PTHR10217:SF465 none none none
PANTHER 376 537 162 PTHR10217:SF465 none none none
PANTHER 20 236 217 PTHR10217:SF465 none none none
PANTHER 376 537 162 PTHR10217 none none none
PANTHER 20 236 217 PTHR10217 none none none
Phobius 101 129 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 130 148 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 43 43 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 324 345 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 346 587 242 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 294 350 57 SSF81324 none none none
SUPERFAMILY 34 232 199 SSF81324 none none none
Phobius 44 67 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 149 167 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 294 350 57 G3DSA:1.10.287.70 none none none
Gene3D 46 231 186 G3DSA:1.10.287.70 none none none
PANTHER 282 349 68 PTHR10217 none none none

5 Localization

Analysis Start End Length
TMHMM 44 66 22
TMHMM 81 100 19
TMHMM 131 153 22
TMHMM 324 346 22
TMHMM 206 228 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting