Protein : Qrob_P0084750.2 Q. robur
Protein Identifier  ? Qrob_P0084750.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=34) K05391 - cyclic nucleotide gated channel, other eukaryote Gene Prediction Quality  validated
Protein length 

Sequence

Length: 227  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015364 1 214 + 214 Gaps:3 30.43 713 46.54 2e-56 Cyclic nucleotide gated channel 1 isoform 1
blastp_kegg lcl|sot:102583090 2 214 + 213 Gaps:3 30.51 708 45.83 3e-56 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|sly:101250084 2 214 + 213 Gaps:3 30.51 708 45.37 1e-55 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|cam:101506091 1 214 + 214 Gaps:6 37.41 588 44.55 5e-55 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|sly:101257475 1 214 + 214 Gaps:3 30.65 708 44.70 2e-54 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|sot:102602102 1 214 + 214 Gaps:3 30.65 708 44.24 8e-54 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|mtr:MTR_3g091080 1 214 + 214 Gaps:5 28.44 770 45.21 2e-53 Cyclic nucleotide-gated ion channel
blastp_kegg lcl|eus:EUTSA_v10012801mg 1 214 + 214 Gaps:8 30.88 719 45.50 2e-53 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1579800 1 214 + 214 Gaps:3 25.89 838 44.24 6e-53 Cyclic nucleotide-gated ion channel putative
blastp_kegg lcl|pop:POPTR_0012s01690g 1 214 + 214 Gaps:6 30.75 709 46.33 5e-52 POPTRDRAFT_569505 cyclic nucleotide-gated channel C family protein
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 1 214 + 214 Gaps:4 30.45 716 44.50 5e-53 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 1 214 + 214 Gaps:15 31.30 706 39.82 7e-43 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 1 214 + 214 Gaps:7 31.08 711 36.65 9e-41 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 1 214 + 214 Gaps:8 31.90 696 36.94 3e-38 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 2 214 + 213 Gaps:19 30.25 747 34.96 4e-37 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 2 214 + 213 Gaps:16 30.70 733 33.78 6e-35 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 1 214 + 214 Gaps:9 30.72 726 34.08 3e-34 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 2 214 + 213 Gaps:18 31.38 717 34.22 5e-34 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L7Z0|CNG17_ARATH 1 214 + 214 Gaps:10 31.11 720 33.48 7e-33 Probable cyclic nucleotide-gated ion channel 17 OS Arabidopsis thaliana GN CNGC17 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 2 214 + 213 Gaps:10 32.30 678 34.70 9e-33 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1
rpsblast_kog gnl|CDD|35719 1 214 + 214 Gaps:39 24.07 727 29.71 2e-28 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 133 226 94 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 196 214 19 SSF81324 none none none
SUPERFAMILY 23 137 115 SSF81324 none none none
Phobius 39 59 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 12 218 207 PF00520 none Ion transport protein IPR005821
PANTHER 1 141 141 PTHR10217:SF465 none none none
Phobius 71 87 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 185 214 30 PTHR10217 none none none
Phobius 107 132 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 141 141 PTHR10217 none none none
Phobius 88 106 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 196 211 16 G3DSA:1.10.287.70 none none none
Gene3D 24 136 113 G3DSA:1.10.287.70 none none none
Phobius 1 38 38 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 60 70 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 185 214 30 PTHR10217:SF465 none none none

3 Localization

Analysis Start End Length
TMHMM 39 56 17
TMHMM 71 90 19
TMHMM 111 133 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting