Protein : Qrob_P0084430.2 Q. robur
Protein Identifier  ? Qrob_P0084430.2 Organism . Name  Quercus robur
Score  92.0 Score Type  egn
Protein Description  (M=3) K00703 - starch synthase [EC:2.4.1.21] Code Enzyme  EC:2.4.1.21
Gene Prediction Quality  validated Protein length 

Sequence

Length: 545  
Kegg Orthology  K00703
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa004088mg 1 415 + 415 Gaps:13 79.10 531 77.38 0.0 hypothetical protein
blastp_kegg lcl|pmum:103329564 1 499 + 499 Gaps:13 83.83 606 77.76 0.0 probable starch synthase 4 chloroplastic/amyloplastic
blastp_kegg lcl|cic:CICLE_v10007868mg 1 464 + 464 Gaps:5 83.10 568 76.91 0.0 hypothetical protein
blastp_kegg lcl|cit:102627834 1 499 + 499 Gaps:5 84.62 598 76.48 0.0 probable starch synthase 4 chloroplastic/amyloplastic-like
blastp_kegg lcl|pop:POPTR_0018s14640g 1 499 + 499 Gaps:8 83.33 618 77.09 0.0 hypothetical protein
blastp_kegg lcl|fve:101290850 16 500 + 485 Gaps:10 82.80 593 76.78 0.0 probable starch synthase 4 chloroplastic/amyloplastic-like
blastp_kegg lcl|vvi:100233071 31 499 + 469 Gaps:12 76.81 608 77.30 0.0 starch synthase VI
blastp_kegg lcl|pxb:103937152 73 499 + 427 Gaps:1 73.24 598 79.45 6e-180 probable starch synthase 4 chloroplastic/amyloplastic
blastp_kegg lcl|sly:100191117 36 499 + 464 Gaps:3 75.90 614 73.39 1e-178 starch synthase VI
blastp_kegg lcl|sot:102579881 36 499 + 464 Gaps:3 75.85 621 72.40 1e-177 probable starch synthase 4 chloroplastic/amyloplastic-like
blastp_pdb 3d1j_A 110 496 + 387 Gaps:48 80.08 477 32.46 5e-23 mol:protein length:477 Glycogen synthase
blastp_pdb 3guh_A 110 496 + 387 Gaps:48 78.76 485 32.46 6e-23 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4u_A 110 496 + 387 Gaps:48 78.76 485 32.46 6e-23 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4t_A 110 496 + 387 Gaps:48 78.76 485 32.46 6e-23 mol:protein length:485 Glycogen synthase
blastp_pdb 2qzs_A 110 496 + 387 Gaps:48 78.76 485 32.46 6e-23 mol:protein length:485 glycogen synthase
blastp_pdb 3cx4_A 110 496 + 387 Gaps:48 78.76 485 32.20 3e-22 mol:protein length:485 Glycogen synthase
blastp_pdb 3cop_A 110 496 + 387 Gaps:48 78.76 485 32.20 3e-22 mol:protein length:485 Glycogen synthase
blastp_pdb 1rzv_B 110 499 + 390 Gaps:28 80.62 485 32.74 8e-21 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzv_A 110 499 + 390 Gaps:28 80.62 485 32.74 8e-21 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzu_B 110 499 + 390 Gaps:28 80.62 485 32.74 8e-21 mol:protein length:485 Glycogen synthase 1
blastp_uniprot_sprot sp|Q6MAS9|GLGA_PARUW 110 499 + 390 Gaps:10 79.80 500 44.61 1e-68 Glycogen synthase OS Protochlamydia amoebophila (strain UWE25) GN glgA PE 3 SV 1
blastp_uniprot_sprot sp|Q0WVX5|SSY4_ARATH 107 496 + 390 Gaps:16 38.27 1040 45.73 3e-61 Probable starch synthase 4 chloroplastic/amyloplastic OS Arabidopsis thaliana GN SS4 PE 2 SV 1
blastp_uniprot_sprot sp|Q3JEW3|GLGA1_NITOC 110 499 + 390 Gaps:26 86.86 487 42.08 3e-59 Glycogen synthase 1 OS Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN glgA1 PE 3 SV 1
blastp_uniprot_sprot sp|Q604D9|GLGA2_METCA 113 499 + 387 Gaps:23 82.34 487 44.14 1e-53 Glycogen synthase 2 OS Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN glgA2 PE 3 SV 2
blastp_uniprot_sprot sp|Q3M9U1|GLGA1_ANAVT 110 496 + 387 Gaps:41 98.58 492 39.18 2e-50 Glycogen synthase 1 OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN glgA1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8Z0Q9|GLGA2_NOSS1 110 496 + 387 Gaps:41 98.58 492 38.76 4e-50 Probable glycogen synthase 2 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN glgA2 PE 3 SV 1
blastp_uniprot_sprot sp|Q2JSZ9|GLGA1_SYNJA 110 499 + 390 Gaps:20 82.08 491 43.92 3e-48 Glycogen synthase 1 OS Synechococcus sp. (strain JA-3-3Ab) GN glgA1 PE 3 SV 1
blastp_uniprot_sprot sp|Q2JNM6|GLGA1_SYNJB 110 499 + 390 Gaps:20 82.48 491 43.70 6e-48 Glycogen synthase 1 OS Synechococcus sp. (strain JA-2-3B'a(2-13)) GN glgA1 PE 3 SV 1
blastp_uniprot_sprot sp|P72623|GLGA2_SYNY3 110 499 + 390 Gaps:22 82.48 491 42.72 4e-46 Probable glycogen synthase 2 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN glgA2 PE 3 SV 1
blastp_uniprot_sprot sp|F4IAG2|SSY3_ARATH 109 498 + 390 Gaps:51 36.08 1042 45.48 1e-43 Starch synthase 3 chloroplastic/amyloplastic OS Arabidopsis thaliana GN SS3 PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 110 499 390 SSF53756 none none none
Gene3D 376 480 105 G3DSA:3.40.50.2000 none none none
PANTHER 103 280 178 PTHR12526:SF304 none none none
PANTHER 300 499 200 PTHR12526:SF304 none none none
Pfam 111 339 229 PF08323 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Starch synthase catalytic domain IPR013534
PANTHER 103 280 178 PTHR12526 none none none
PANTHER 300 499 200 PTHR12526 none none none
Pfam 381 464 84 PF00534 none Glycosyl transferases group 1 IPR001296

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 20 19

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting