4 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0020037 | heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
GO:0055114 | oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
GO:0004601 | peroxidase activity | Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. |
GO:0006979 | response to oxidative stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. |
36 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|pmum:103323527 | 1 | 323 | + | 323 | Gaps:3 | 100.00 | 326 | 81.29 | 0.0 | peroxidase 16-like |
blastp_kegg | lcl|pper:PRUPE_ppa008569mg | 1 | 323 | + | 323 | Gaps:3 | 100.00 | 326 | 81.29 | 0.0 | hypothetical protein |
blastp_kegg | lcl|fve:101310594 | 1 | 323 | + | 323 | Gaps:3 | 100.00 | 326 | 80.06 | 0.0 | peroxidase 45-like |
blastp_kegg | lcl|pmum:103323528 | 1 | 323 | + | 323 | Gaps:3 | 100.00 | 326 | 79.75 | 0.0 | peroxidase 16 |
blastp_kegg | lcl|pxb:103938713 | 1 | 323 | + | 323 | Gaps:3 | 100.00 | 326 | 78.53 | 0.0 | peroxidase 16-like |
blastp_kegg | lcl|tcc:TCM_039289 | 1 | 323 | + | 323 | Gaps:4 | 100.00 | 327 | 78.29 | 0.0 | Peroxidase family protein |
blastp_kegg | lcl|mdm:103453173 | 1 | 323 | + | 323 | Gaps:3 | 100.00 | 326 | 77.91 | 0.0 | peroxidase 16-like |
blastp_kegg | lcl|pop:POPTR_0018s09710g | 17 | 323 | + | 307 | Gaps:3 | 94.51 | 328 | 80.65 | 0.0 | POPTRDRAFT_737716 Peroxidase 16 precursor family protein |
blastp_kegg | lcl|eus:EUTSA_v10025699mg | 1 | 323 | + | 323 | Gaps:2 | 99.39 | 327 | 75.69 | 0.0 | hypothetical protein |
blastp_kegg | lcl|gmx:100804620 | 21 | 323 | + | 303 | Gaps:1 | 93.83 | 324 | 81.91 | 0.0 | peroxidase 16-like |
blastp_pdb | 1qo4_A | 24 | 323 | + | 300 | Gaps:9 | 99.02 | 306 | 43.23 | 5e-77 | mol:protein length:306 PEROXIDASE |
blastp_pdb | 1pa2_A | 24 | 323 | + | 300 | Gaps:9 | 99.02 | 306 | 43.23 | 5e-77 | mol:protein length:306 PEROXIDASE |
blastp_pdb | 3hdl_A | 25 | 323 | + | 299 | Gaps:11 | 99.34 | 304 | 45.03 | 1e-76 | mol:protein length:304 Royal Palm Tree Peroxidase |
blastp_pdb | 3atj_B | 24 | 323 | + | 300 | Gaps:11 | 98.71 | 309 | 42.62 | 7e-72 | mol:protein length:309 PROTEIN (HORSERADISH PEROXIDASE C1A) |
blastp_pdb | 3atj_A | 24 | 323 | + | 300 | Gaps:11 | 98.71 | 309 | 42.62 | 7e-72 | mol:protein length:309 PROTEIN (HORSERADISH PEROXIDASE C1A) |
blastp_pdb | 1gwt_A | 24 | 323 | + | 300 | Gaps:11 | 98.71 | 309 | 42.62 | 7e-72 | mol:protein length:309 PEROXIDASE C1A |
blastp_pdb | 1gwo_A | 24 | 323 | + | 300 | Gaps:11 | 98.71 | 309 | 42.30 | 3e-71 | mol:protein length:309 PEROXIDASE C1A |
blastp_pdb | 1gx2_B | 24 | 323 | + | 300 | Gaps:11 | 98.71 | 309 | 42.30 | 3e-71 | mol:protein length:309 PEROXIDASE C1A |
blastp_pdb | 1gx2_A | 24 | 323 | + | 300 | Gaps:11 | 98.71 | 309 | 42.30 | 3e-71 | mol:protein length:309 PEROXIDASE C1A |
blastp_pdb | 1hch_A | 24 | 323 | + | 300 | Gaps:11 | 99.67 | 306 | 42.30 | 5e-71 | mol:protein length:306 PEROXIDASE C1A |
blastp_uniprot_sprot | sp|Q96522|PER45_ARATH | 22 | 323 | + | 302 | none | 92.92 | 325 | 78.15 | 0.0 | Peroxidase 45 OS Arabidopsis thaliana GN PER45 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q96518|PER16_ARATH | 1 | 323 | + | 323 | none | 100.00 | 323 | 73.07 | 1e-179 | Peroxidase 16 OS Arabidopsis thaliana GN PER16 PE 1 SV 2 |
blastp_uniprot_sprot | sp|Q9SZE7|PER51_ARATH | 18 | 323 | + | 306 | Gaps:4 | 94.22 | 329 | 65.16 | 6e-151 | Peroxidase 51 OS Arabidopsis thaliana GN PER51 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q96510|PER35_ARATH | 7 | 323 | + | 317 | Gaps:5 | 97.87 | 329 | 63.66 | 4e-149 | Peroxidase 35 OS Arabidopsis thaliana GN PER35 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q43873|PER73_ARATH | 12 | 323 | + | 312 | Gaps:4 | 96.05 | 329 | 64.56 | 4e-148 | Peroxidase 73 OS Arabidopsis thaliana GN PER73 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q43731|PER50_ARATH | 23 | 323 | + | 301 | Gaps:4 | 92.71 | 329 | 63.61 | 2e-143 | Peroxidase 50 OS Arabidopsis thaliana GN PER50 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q96509|PER55_ARATH | 12 | 323 | + | 312 | Gaps:6 | 94.55 | 330 | 57.37 | 1e-119 | Peroxidase 55 OS Arabidopsis thaliana GN PER55 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q9FJR1|PER65_ARATH | 7 | 323 | + | 317 | Gaps:11 | 94.61 | 334 | 47.78 | 5e-90 | Peroxidase 65 OS Arabidopsis thaliana GN PER65 PE 2 SV 2 |
blastp_uniprot_sprot | sp|O23609|PER41_ARATH | 17 | 323 | + | 307 | Gaps:12 | 93.56 | 326 | 47.21 | 2e-89 | Peroxidase 41 OS Arabidopsis thaliana GN PER41 PE 3 SV 1 |
blastp_uniprot_sprot | sp|Q9FL16|PER63_ARATH | 23 | 323 | + | 301 | Gaps:12 | 91.16 | 328 | 46.49 | 6e-83 | Peroxidase 63 OS Arabidopsis thaliana GN PER63 PE 2 SV 1 |
28 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
Gene3D | 176 | 302 | 127 | G3DSA:1.10.420.10 | none | none | none |
ProSitePatterns | 183 | 193 | 11 | PS00435 | none | Peroxidases proximal heme-ligand signature. | IPR019793 |
PANTHER | 1 | 323 | 323 | PTHR31517 | none | none | none |
Gene3D | 30 | 175 | 146 | G3DSA:1.10.520.10 | none | none | none |
Phobius | 1 | 23 | 23 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
ProSitePatterns | 56 | 67 | 12 | PS00436 | none | Peroxidases active site signature. | IPR019794 |
PANTHER | 1 | 323 | 323 | PTHR31517:SF3 | none | none | none |
PRINTS | 135 | 150 | 16 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 34 | 53 | 20 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 116 | 126 | 11 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 58 | 78 | 21 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 257 | 274 | 18 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 297 | 310 | 14 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 95 | 108 | 14 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 241 | 256 | 16 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 182 | 194 | 13 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
Phobius | 24 | 323 | 300 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
ProSiteProfiles | 24 | 323 | 300 | PS50873 | none | Plant heme peroxidase family profile. | IPR002016 |
Phobius | 7 | 18 | 12 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
Phobius | 19 | 23 | 5 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
Phobius | 1 | 6 | 6 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
PRINTS | 243 | 258 | 16 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 56 | 70 | 15 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 183 | 198 | 16 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 117 | 134 | 18 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 135 | 147 | 13 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
SUPERFAMILY | 24 | 323 | 300 | SSF48113 | none | none | IPR010255 |
Pfam | 41 | 287 | 247 | PF00141 | none | Peroxidase | IPR002016 |
3 Localization
Analysis | Start | End | Length |
---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 25 | 24 |
SignalP_EUK | 1 | 23 | 22 |
TMHMM | 7 | 25 | 18 |
14 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran2_2015_nEpis_3P | Qrob_Chr12 | 12 | s_1AOES6_1466 | s_1B0DDG_1094 | 28,97 | 28,55 | 30,1 | lod | 3.6 | 8.4 |
Bourran2_2014_nPriLBD*_3P | Qrob_Chr11 | 11 | v_12066_307 | s_1B15GJ_447 | 3,37 | 0,57 | 16,17 | lod | 3,4299 | 6,9 |
Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
Bourran2_2002_QTL16_peak_Bud_burst_A4 | Qrob_Chr11 | 11 | s_A9OIA_166 | s_1C6WBF_114 | 21,23 | 2,83 | 42,83 | lod | 5,1 | 7,2 |
Bourran2_2015_nSeqBC_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,06 | 25,47 | 27,72 | lod | 3.6 | 7.1 |
Bourran2_2014_nP_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 7,9 | 0,09 | 30,09 | lod | 2,3636 | 5 |
Bourran2_2014_nPriBD_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 5,54 | 0,4 | 20,6 | lod | 2,6345 | 5,9 |
Bourran1_2003_QTL6_peak_Bud_burst_A4 | Qrob_Chr11 | 11 | v_12066_307 | s_1A9FKZ_348 | 3,59 | 0 | 20,89 | lod | 3,4 | 9,4 |
PM_1999_QTL17_peak_Bud_burst_3P | Qrob_Chr11 | 11 | s_1A9FKZ_348 | v_11486_883 | 4,8 | 0 | 24,8 | lod | 3,5 | 6,2 |
Bourran_2000_2002_QTL1_Delta.F | Qrob_Chr11 | 11 | v_AC14YL05_1355 | s_2F1WOG_696 | 10.96 | 3,25 | 16,39 | lod | 25.0121 | 0.2 |
Bourran_2000_2002_QTL5_Delta.F | Qrob_Chr11 | 11 | s_1BD29X_620 | s_2F1WOG_696 | 2.94 | 1,08 | 16,39 | lod | 5.936 | 0.05 |
Bourran2_2014_vEpiBC*_3P | Qrob_Chr11 | 11 | s_1A5GRX_415 | v_4456_500 | 9,37 | 0 | 19,27 | lod | 3,513 | 9,3 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf | Qrob_Chr11 | 11 | s_1A9FKZ_348 | v_7268_36 | 13.33 | 3,98 | 19,87 | lod | 29.1377 | 0.18 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf | Qrob_Chr11 | 11 | s_1BD29X_620 | s_1A5BYY_1671 | 2.26 | 1,08 | 11,24 | lod | 5.8451 | 0.037 |